PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG005217.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 116aa MW: 13563.3 Da PI: 7.7 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.6 | 1.9e-12 | 5 | 95 | 1 | 89 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE....EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy..rkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 f kvl s + +++rl++p + ++ +g+ +++ +d+ r+W ++l++ +++++ +t+ W +Fv+++gL++gD ++F++++ ++ CCG005217.1 5 FTKVL--SPTDTTHRLTIPAANLGDFefpMGE--HAIDIEATDTIQRQWIFRLSIrqDNNPNPrPAFTGQWIQFVNEKGLRVGDRIIFSRQQVEG 95 78999..88888899*******9999987655..45689999***********8877555444699***********************776544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-17 | 2 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.16E-15 | 4 | 90 | No hit | No description |
SuperFamily | SSF101936 | 6.28E-14 | 4 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.5E-8 | 5 | 96 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence Send to blast |
MEQLFTKVLS PTDTTHRLTI PAANLGDFEF PMGEHAIDIE ATDTIQRQWI FRLSIRQDNN 60 PNPRPAFTGQ WIQFVNEKGL RVGDRIIFSR QQVEGNGVQY SIRAERRIFN YWVNVQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011028527.1 | 1e-81 | PREDICTED: B3 domain-containing protein Os02g0764100-like | ||||
TrEMBL | A0A2K2AYH5 | 2e-75 | A0A2K2AYH5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s23010.1 | 7e-76 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11016 | 3 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 1e-07 | related to ABI3/VP1 1 |