PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG005216.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 217aa MW: 24652.3 Da PI: 6.9423 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.2 | 2.6e-12 | 6 | 86 | 3 | 83 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFk 83 ++++++d ++g l++p + ++ +s+ + + d +g++W + +++ r+ s +++l+ GW +Fv++ gL++ D v+++ CCG005216.1 6 SKFLTADDIENG-LSIPGCSLGPLPFQEGQSMNMHVHDGNGQEWIFSCTIkRNESMGHFLSVGWIKFVRERGLRVDDKVTIH 86 566688888888.99998888777788999******************885666666***********************98 PP | |||||||
2 | B3 | 33.5 | 7.4e-11 | 129 | 185 | 28 | 83 |
--..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 28 gkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFk 83 ++ +s+ + + d +g++W + +++ r+ s +++l+ GW +Fv++ gL++ D v ++ CCG005216.1 129 FQEGQSMNMHVHDGNGQEWIFSCTIkRNESMGHFLSVGWIKFVRERGLRVDDKVSIH 185 467899*****************885666666********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.37E-9 | 4 | 86 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-10 | 4 | 88 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.77E-9 | 5 | 111 | No hit | No description |
Pfam | PF02362 | 2.9E-10 | 6 | 86 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-8 | 117 | 185 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.0E-8 | 130 | 187 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.87E-7 | 134 | 185 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MALVFSKFLT ADDIENGLSI PGCSLGPLPF QEGQSMNMHV HDGNGQEWIF SCTIKRNESM 60 GHFLSVGWIK FVRERGLRVD DKVTIHEEAM KNQATGTWIK MEVKRKIRLF DDIENGLSIP 120 GCSLGPLPFQ EGQSMNMHVH DGNGQEWIFS CTIKRNESMG HFLSVGWIKF VRERGLRVDD 180 KVSIHEEAMK NQATGTCIKV EVKRKIRLFG EDVWADV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011002451.1 | 3e-59 | PREDICTED: uncharacterized protein LOC105109425 | ||||
TrEMBL | U7DUM1 | 7e-70 | U7DUM1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0601s00200.1 | 1e-70 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13182 | 5 | 19 |