PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005214.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 110aa    MW: 12738.5 Da    PI: 10.4409
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005214.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.19.1e-15485185
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE- CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld 85
                 f k+l + dv   +rl+lp + ++++  ++e    l+++de+g++W+++++++ ++++   l++ W +Fv+ +gL++gD++v+  d
  CCG005214.1  4 FTKKLDRTDVQ--RRLTLPENSLKDFPRDHEA--NLKFKDEEGQVWTFRCRVSPGRSSkPALSGDWFSFVRKKGLRTGDVIVIISD 85
                 66667444444..569********99777554..6***************88444444599*********************9744 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.772104IPR003340B3 DNA binding domain
SuperFamilySSF1019368.5E-15490IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.7E-84104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.5E-17490IPR015300DNA-binding pseudobarrel domain
CDDcd100171.34E-164102No hitNo description
PfamPF023621.7E-111486IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MENFTKKLDR TDVQRRLTLP ENSLKDFPRD HEANLKFKDE EGQVWTFRCR VSPGRSSKPA  60
LSGDWFSFVR KKGLRTGDVI VIISDKEKDL AAGDHFKIKI KKSASTYHQN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166891e-160AC216689.1 Populus trichocarpa clone POP101-J02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002452.14e-42PREDICTED: double-stranded RNA-binding protein 3-like
TrEMBLA0A2K2AYF18e-71A0A2K2AYF1_POPTR; Uncharacterized protein
STRINGPOPTR_0004s22930.11e-70(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13561527