PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG005213.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 122aa MW: 13991.3 Da PI: 10.5204 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.5 | 1.6e-15 | 6 | 102 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 f+k+l s + r+++p + ++++ +gk s+ ++ d +gr W+++++ rkk+ r vl++GW +Fvk+ LkegD v+F++ ++ + + CCG005213.1 6 FIKTL--SKTDIDYRMTIPMDSLSAFqipEGK--YSRAVVAFDITGRPWSFRCSTRKKDPRpkPVLSSGWIRFVKDRCLKEGDEVIFSVAHNdGAEGP 99 77888..555556679*******999655444..46789999***********9988888889*************************8877555555 PP EEE CS B3 93 vvk 95 ++ CCG005213.1 100 QFR 102 555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-16 | 3 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.588 | 4 | 107 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.23E-17 | 4 | 88 | No hit | No description |
SuperFamily | SSF101936 | 9.61E-17 | 4 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 5.1E-4 | 6 | 109 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-12 | 6 | 103 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MPKKVFIKTL SKTDIDYRMT IPMDSLSAFQ IPEGKYSRAV VAFDITGRPW SFRCSTRKKD 60 PRPKPVLSSG WIRFVKDRCL KEGDEVIFSV AHNDGAEGPQ FRIEARKKLA KLFGQDIWSN 120 PL |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216689 | 1e-134 | AC216689.1 Populus trichocarpa clone POP101-J02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011028526.1 | 4e-86 | PREDICTED: uncharacterized protein LOC105128509 | ||||
TrEMBL | U5GKR7 | 1e-56 | U5GKR7_POPTR; B3 family protein | ||||
STRING | POPTR_0004s22960.1 | 2e-57 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11016 | 3 | 36 |