PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005212.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 116aa    MW: 13323.4 Da    PI: 9.1974
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005212.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.71.8e-12686386
                 EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
           B3  3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldg 86
                 k+l +sdv ++  l lp + ++++  g +   + l+++de+g +W++++++  ++ +r vl + W  Fv+++gLk+gD++v+ +++
  CCG005212.1  6 KKLNTSDVDRK--LLLPENSLKNFpRGHE---TFLKIRDEDGIVWTFRCKIpPGGHSRPVLYGDWFLFVRQKGLKVGDIIVIVFNK 86
                 78888999887..9*******88863333...459**************9976666679*********************998654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.5022105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.5E-15487IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0029495IPR003340B3 DNA binding domain
SuperFamilySSF1019361.27E-13587IPR015300DNA-binding pseudobarrel domain
CDDcd100171.39E-14588No hitNo description
PfamPF023628.9E-10686IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MEEVTKKLNT SDVDRKLLLP ENSLKNFPRG HETFLKIRDE DGIVWTFRCK IPPGGHSRPV  60
LYGDWFLFVR QKGLKVGDII VIVFNKEKAP ATGTSGDHFE IKQKNTKELF YSLECA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002452.19e-37PREDICTED: double-stranded RNA-binding protein 3-like
TrEMBLA0A2K2AYG31e-56A0A2K2AYG3_POPTR; Uncharacterized protein
STRINGPOPTR_0003s00430.18e-41(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13561527