PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CCG005211.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 121aa MW: 14130.3 Da PI: 8.8462 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.6 | 9.3e-13 | 6 | 86 | 3 | 86 |
EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 k+l +sdv ++ l lp +++++ g+ ++ l+++de+g +W++++++ ++ +r vl + W Fv+++gLk+gD++v+ +++ CCG005211.1 6 KKLNTSDVDRK--LLLPENCLKNLpRGQ---ETFLKIKDEDGIVWTFRCKIpPGGHSRPVLYGDWFLFVRQKGLKVGDIIVIVFNK 86 78888999887..9*****996555444...456***************9976666679*********************998655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.46 | 2 | 106 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.009 | 4 | 96 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-15 | 4 | 88 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.25E-14 | 5 | 90 | No hit | No description |
SuperFamily | SSF101936 | 2.88E-13 | 5 | 86 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.3E-10 | 6 | 86 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 121 aa Download sequence Send to blast |
MEEVTKKLNT SDVDRKLLLP ENCLKNLPRG QETFLKIKDE DGIVWTFRCK IPPGGHSRPV 60 LYGDWFLFVR QKGLKVGDII VIVFNKQKAR AAADTSRDHF EIKQSNTEEF FYSLECPYKF 120 F |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011002452.1 | 1e-35 | PREDICTED: double-stranded RNA-binding protein 3-like | ||||
TrEMBL | A0A2K2AYG3 | 6e-63 | A0A2K2AYG3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s00430.1 | 4e-39 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13561 | 5 | 27 |