PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG005210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 124aa MW: 14486.7 Da PI: 9.5371 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.6 | 1.9e-12 | 7 | 102 | 1 | 92 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 f k+l++ dv +r+ +p ++ + +gk+ e+++++ + ++g sW+++++ rkk+ vl++GW ++v+++gL egD v F +++ e+ CCG005210.1 7 FTKILSRTDVE--HRMAIPMGSFDVFqipQGKHSEQFDVIDMIKTGHSWRFQCSTRKKD-FypkPVLSSGWIDYVREKGLGEGDKVSFFWVQKdGEEG 101 77888555555..679****99977799988888888888888**********655555.348899**********************9775434444 PP . CS B3 92 l 92 l CCG005210.1 102 L 102 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.59E-13 | 4 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.6E-14 | 4 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.938 | 5 | 110 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.35E-16 | 6 | 99 | No hit | No description |
Pfam | PF02362 | 1.3E-9 | 7 | 104 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0054 | 7 | 110 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MYQRLIFTKI LSRTDVEHRM AIPMGSFDVF QIPQGKHSEQ FDVIDMIKTG HSWRFQCSTR 60 KKDFYPKPVL SSGWIDYVRE KGLGEGDKVS FFWVQKDGEE GLRLGVQAQK KLIRLLGKDC 120 WDTV |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216689 | 1e-176 | AC216689.1 Populus trichocarpa clone POP101-J02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024455931.1 | 1e-60 | uncharacterized protein LOC18098285 | ||||
TrEMBL | B9PC87 | 2e-75 | B9PC87_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s22940.1 | 3e-76 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11016 | 3 | 36 |