PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG005209.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 123aa MW: 14731.2 Da PI: 10.6911 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.2 | 4.6e-11 | 7 | 103 | 1 | 93 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEE..TTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEE.E-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltled..esgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFk.ldgrsef 90 f+k+l++ dv ++r+++p + ++ + +gk sk ++ d +gr W+++++ r+k+ v+++GW ++++++ L egD v F l+++ e+ CCG005209.1 7 FKKKLSRTDV--KHRMTIPMERFNVFqipQGK--HSKRFVFIDmiDTGRPWSFRCSTRRKDVYlkPVFSSGWIQYAREKCLSEGDQVSFFwLEKDGEE 100 5666644444..4579****999666887444..34455666655699*******65555544666777******************99834444444 PP ..E CS B3 91 elv 93 l+ CCG005209.1 101 GLR 103 455 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.7E-14 | 3 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.12E-12 | 3 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.924 | 5 | 110 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-7 | 6 | 104 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.69E-12 | 6 | 99 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MHPRLFFKKK LSRTDVKHRM TIPMERFNVF QIPQGKHSKR FVFIDMIDTG RPWSFRCSTR 60 RKDVYLKPVF SSGWIQYARE KCLSEGDQVS FFWLEKDGEE GLRLGVQAQK KLRLWGQDCW 120 ATV |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216689 | 1e-144 | AC216689.1 Populus trichocarpa clone POP101-J02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024455931.1 | 2e-48 | uncharacterized protein LOC18098285 | ||||
TrEMBL | A0A2K2AYF7 | 2e-68 | A0A2K2AYF7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s22950.1 | 2e-70 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11016 | 3 | 36 |