PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG005208.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 125aa MW: 14826.3 Da PI: 10.8191 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.4 | 1.3e-13 | 7 | 108 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE..TTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled..esgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.se 89 f k+l++ dv ++r+++p + ++ +gk sk ++ d +gr W+++++ rkk+ + v+t+GW e+v+ +gL+egD v F ++++ e CCG005208.1 7 FTKILSQTDV--KHRMTIPMESFNVVfqipQGK--HSKLFVFIDmiDTGRPWSFRCSTRKKDVHpkPVFTSGWIEYVRRKGLREGDQVSFFFVQKdGE 100 7888955555..5679*****996669887555..45566777766799*******98888887999***********************98866566 PP E..EEEEE CS B3 90 felvvkvf 97 + l+++v+ CCG005208.1 101 EGLRFGVH 108 66777775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-16 | 4 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.14E-15 | 4 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.841 | 5 | 111 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.47E-14 | 6 | 100 | No hit | No description |
Pfam | PF02362 | 3.4E-10 | 7 | 108 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0023 | 7 | 111 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MYPRLIFTKI LSQTDVKHRM TIPMESFNVV FQIPQGKHSK LFVFIDMIDT GRPWSFRCST 60 RKKDVHPKPV FTSGWIEYVR RKGLREGDQV SFFFVQKDGE EGLRFGVHAQ KKLRLWGKNC 120 WTTPF |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216689 | 1e-169 | AC216689.1 Populus trichocarpa clone POP101-J02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024455931.1 | 2e-52 | uncharacterized protein LOC18098285 | ||||
TrEMBL | A0A2K2AYF7 | 9e-76 | A0A2K2AYF7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s22950.1 | 6e-78 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11016 | 3 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 3e-06 | related to ABI3/VP1 1 |