PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG005207.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 110aa MW: 12636.4 Da PI: 10.2385 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.8 | 2.6e-15 | 4 | 85 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld 85 f k+l ++ ++rl+lp ++++++ ++e l+++de+g++W+++++++ ++++ l++ W +Fv+ +gL++gD++v+ d CCG005207.1 4 FTKKL--DSTDVQRRLTLPENCLKDFPRDHEA--NLKFKDEEGQVWTFRCRVSPGRSSkPALSGDWFSFVRKKGLRTGDVIVIISD 85 66777..44444567*********99777554..6***************88444444599*********************9744 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.911 | 2 | 104 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.54E-15 | 4 | 88 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.0E-7 | 4 | 104 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-17 | 4 | 89 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.84E-17 | 4 | 102 | No hit | No description |
Pfam | PF02362 | 3.3E-12 | 5 | 85 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence Send to blast |
MENFTKKLDS TDVQRRLTLP ENCLKDFPRD HEANLKFKDE EGQVWTFRCR VSPGRSSKPA 60 LSGDWFSFVR KKGLRTGDVI VIISDKEKDV AAGENFKIKI KKSASTHHQN |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216689 | 1e-175 | AC216689.1 Populus trichocarpa clone POP101-J02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011002452.1 | 3e-44 | PREDICTED: double-stranded RNA-binding protein 3-like | ||||
TrEMBL | A0A2K2AYF1 | 2e-73 | A0A2K2AYF1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s22930.1 | 2e-73 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13561 | 5 | 27 |