PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG005156.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | TCP | ||||||||
Protein Properties | Length: 200aa MW: 21388 Da PI: 9.7685 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 88.2 | 1.9e-27 | 50 | 128 | 5 | 66 |
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................s 66 +++++++hTkv gR+RRvR++a++aar+F+L +eLG+ +d++tie Ll+ a+++i++ tgt s CCG005156.1 50 TSQSKDRHTKVHGRGRRVRIPALTAARVFQLPRELGHRSDGETIEGLLRHAEASIIASTGTgpipsipisttvgstpiS 128 5689*********************************************************555444444444332220 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.6E-23 | 52 | 144 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 21.721 | 53 | 107 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MASETVLYNF SSTSNTQHQQ PSPNSNNSVV PSPTTGGSQS KLTHLRKSTT SQSKDRHTKV 60 HGRGRRVRIP ALTAARVFQL PRELGHRSDG ETIEGLLRHA EASIIASTGT GPIPSIPIST 120 TVGSTPISSS SPSPSASCKV HPVNCIGPEM FSLLTAPSSR LDLDYRHMPF TALLLQPMAA 180 TVAVDAEEGR QQELTGEHKM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209228 | 0.0 | AC209228.1 Populus trichocarpa clone POP075-L19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011013539.1 | 1e-144 | PREDICTED: transcription factor PCF1-like | ||||
Swissprot | O23875 | 8e-30 | PCF1_ORYSJ; Transcription factor PCF1 | ||||
TrEMBL | B9N7J5 | 1e-126 | B9N7J5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s11350.1 | 1e-126 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37000.1 | 3e-26 | TCP family protein |