PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG005133.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | SBP | ||||||||
Protein Properties | Length: 196aa MW: 21938.6 Da PI: 9.7119 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 136.3 | 9.1e-43 | 72 | 148 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqve+C a+l++ak+yhrrhkvCevh+k+p+v+v+gl+qrfCqqCsrfhel efDe+krsCrrrLa+hnerrrk++a CCG005133.1 72 CQVEKCGANLTDAKRYHRRHKVCEVHAKSPAVVVAGLRQRFCQQCSRFHELAEFDETKRSCRRRLAGHNERRRKSTA 148 **************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 5.7E-36 | 64 | 133 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.735 | 69 | 146 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.18E-40 | 70 | 150 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.0E-32 | 72 | 145 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MDARTLVGKN SSLKEKMINK DDFLIEDELE DDMEEYESGG GVGLADDEKK KGAGVMHGKR 60 GTGSGGASPP SCQVEKCGAN LTDAKRYHRR HKVCEVHAKS PAVVVAGLRQ RFCQQCSRFH 120 ELAEFDETKR SCRRRLAGHN ERRRKSTAES YGEGSNRKGV NTPLKERPCR QADERGRFQI 180 NIPPQGSSSY KRSQIR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-37 | 64 | 145 | 3 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16914499}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156. {ECO:0000269|PubMed:16914499}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU231969 | 6e-62 | CU231969.1 Populus EST from mild drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011043824.1 | 1e-144 | PREDICTED: squamosa promoter-binding protein 1-like | ||||
Swissprot | Q9S758 | 8e-51 | SPL5_ARATH; Squamosa promoter-binding-like protein 5 | ||||
TrEMBL | A0A1B3IL68 | 1e-135 | A0A1B3IL68_POPTO; Squamosa promoter-binding protein 20 | ||||
STRING | POPTR_0001s40870.1 | 1e-128 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF535 | 34 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53160.2 | 2e-52 | squamosa promoter binding protein-like 4 |
Publications ? help Back to Top | |||
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