PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG005058.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | AP2 | ||||||||
Protein Properties | Length: 431aa MW: 47402.8 Da PI: 8.4196 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.7 | 2.8e-13 | 79 | 135 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ ++k+ g ++ +e Aa+a++ a++k++g CCG005058.1 79 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 135 57*******************6666777775555599******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.2E-9 | 79 | 135 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-15 | 79 | 144 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.518 | 80 | 143 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.3E-12 | 80 | 144 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.3E-19 | 80 | 149 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-5 | 81 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-5 | 125 | 145 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MASSSDPVLK PEIGGGVCGG GSGGCGGGGA GGESSEAAVI ANDQLLLYRG LKKPRKERGC 60 TAKERISKMP PCTAGKRSSI YRGVTRHRWT GRYEAHLWDK STWNQNQNKK GKQGAYDDEE 120 AAARAYDLAA LKYWGPGTLI NFPVTDYTRD LEEMQNVSRE EYLASLRRKS SGFSRGVSKY 180 RALSSRWDSS YSRMPGSEYF SNVNYGAGDD QAAESEYSFC IERKIDLTGY IKWWGSNKTS 240 LAESMTKSSE DTKHGCADDI GSELKTTERE VQCTEPYQMP RLGLSVEGKR HKGSKISALS 300 ILSQSAAYKN LQEKASKKQE TVTENDENEN RNNINKMDHG KAVEKSTSHD SNSERLAAAL 360 GMTGGLSLQR NVPLTPFLSA PLLTNYNTID PLVDPILWTS LVPALPTGLS RNPEVTKTET 420 SSTYSFFRPE E |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC217587 | 0.0 | AC217587.1 Populus trichocarpa clone POP031-F05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024458884.1 | 0.0 | AP2-like ethylene-responsive transcription factor At2g41710 isoform X4 | ||||
Swissprot | Q8GWK2 | 1e-168 | AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710 | ||||
TrEMBL | A0A3N7F191 | 0.0 | A0A3N7F191_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s04820.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6007 | 29 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41710.1 | 1e-157 | AP2 family protein |