PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG004974.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 118aa MW: 14151 Da PI: 8.8775 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.2 | 9.2e-11 | 6 | 101 | 3 | 96 |
EE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 k+l +++ k++rl +p + ++++ +g+ +s++ + d + ++W++k+++r+ ++ +l++ W ++v+++gLk gD v++++d+++++e + CCG004974.1 6 KIL-SESDAKNKRLEFPSRSLSAFpmpDGQ--NSVQFVAFDMQEQQWRLKVSIRNEGRYpkPWLKGEWHDYVHQKGLKKGDKVILTMDEEENGERIYR 100 555.455566778********999866444..677888889999*******99888877889************************998877765555 PP E CS B3 96 v 96 + CCG004974.1 101 I 101 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.009 | 3 | 105 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.0E-13 | 4 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.0E-9 | 5 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.10E-13 | 6 | 93 | No hit | No description |
Pfam | PF02362 | 2.4E-7 | 7 | 101 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MEVMNKILSE SDAKNKRLEF PSRSLSAFPM PDGQNSVQFV AFDMQEQQWR LKVSIRNEGR 60 YPKPWLKGEW HDYVHQKGLK KGDKVILTMD EEENGERIYR IRAERKHFGF WYSIDDQQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011048022.1 | 3e-79 | PREDICTED: uncharacterized protein LOC105142200 | ||||
TrEMBL | A0A3N7FPE9 | 3e-81 | A0A3N7FPE9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0021s00530.1 | 1e-75 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15317 | 3 | 7 |