PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG004861.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 338aa    MW: 37779.8 Da    PI: 6.17
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG004861.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.92.1e-35131052103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k+y++++d+++++lisw + +nsf+v+d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+k+ll++i 
   CCG004861.1  13 FVLKIYQMVSDPTTDSLISWGRANNSFIVIDPLDFSQRILPVYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEWFLRGQKQLLKNIV 100
                   9********************999*****************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
   CCG004861.1 101 RRKHS 105
                   *9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.1E-519102IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-3310102IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.2E-3711102IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.4E-181336IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.5E-3013102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-185163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-186476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEANNNNNII APFVLKIYQM VSDPTTDSLI SWGRANNSFI VIDPLDFSQR ILPVYFKHNN  60
FSSFVRQLNT YGFRKVDPDR WEFANEWFLR GQKQLLKNIV RRKHSTNNKG SSYMQVNIKG  120
EDFDDEEIIM EIARLKQEQK ALEQELEGMN KRLEATERRP QQMMAFIYKV VEDPDLLPRM  180
ILEKERTRQI KDKKQRLMIS SSATSPSGMA ISSTSTKIKS EVVHEEGSIG VISSPETVFN  240
VDKFCQSSPS PDGSDINAIG WLDQVNYGLA VAGPSPFTTG SMGAGIGATV AVLPQGNSAV  300
IGYGGDWGAH MNYFGEMAAG VEDRPRPSYP FSLLGGGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A4e-27101027110Heat shock factor protein 1
5hdn_A4e-27101027110Heat shock factor protein 1
5hdn_B4e-27101027110Heat shock factor protein 1
5hdn_C4e-27101027110Heat shock factor protein 1
5hdn_D4e-27101027110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0140110.0KP014011.1 Populus simonii heat shock transcription factor C1 (HsfC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043463.10.0PREDICTED: heat stress transcription factor C-1
SwissprotQ9LV521e-92HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A0N7DKH10.0A0A0N7DKH1_9ROSI; Heat shock transcription factor C1
TrEMBLB9ILM20.0B9ILM2_POPTR; Uncharacterized protein
STRINGPOPTR_0018s05770.11e-165(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83673038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.13e-81heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]