PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG004845.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Trihelix

Protein Properties

Length: 354aa MW: 41425.5 Da PI: 4.3088

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG004845.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	36.1	1.7e-11	121	202	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++e +L+e+ ++ +l+r++l+ +W +v++k+ + ++er+ qC++ ++ l++rykk+k+ ++ s+++yf++++ CCG004845.1 121 EWSEHEKFVLLEVWGDKFLQLGRNSLRSEDWVDVAEKVsETSKIERNEAQCRQMMDVLKRRYKKEKAKGGN-----FSKWAYFNKMD 202 5***********************************555678*******************9998.....469*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.0E-18	120	204	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MDYIEDDPRY PPKSYSMNRS KKHPLYPQRQ TPTLHYNYDY DYDYDYLDVD EDGDELDDEF 60 LDKNDSSYNP GGGYARKFQR NEEGFERYPK RQRLKNPVSN YEFAPRNPRL LAYGDGNSAV 120 EWSEHEKFVL LEVWGDKFLQ LGRNSLRSED WVDVAEKVSE TSKIERNEAQ CRQMMDVLKR 180 RYKKEKAKGG NFSKWAYFNK MDMLMKQESG TVGGFSLACG VDSGEYVFMD TRVYLDRANM 240 NDEMRDSPCE SEEEEEEEEE GGSAGNDGMK GLRVLAESVQ KFGEIYGKIE SSKREQMMEL 300 ERMRIEFQMD LELQKKQILD RAQAEIAKIR EEDDDEEDED NSDDDDVSGG NISK

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MDYIEDDPRY PPKSYSMNRS KKHPLYPQRQ TPTLHYNYDY DYDYDYLDVD EDGDELDDEF  60
LDKNDSSYNP GGGYARKFQR NEEGFERYPK RQRLKNPVSN YEFAPRNPRL LAYGDGNSAV  120
EWSEHEKFVL LEVWGDKFLQ LGRNSLRSED WVDVAEKVSE TSKIERNEAQ CRQMMDVLKR  180
RYKKEKAKGG NFSKWAYFNK MDMLMKQESG TVGGFSLACG VDSGEYVFMD TRVYLDRANM  240
NDEMRDSPCE SEEEEEEEEE GGSAGNDGMK GLRVLAESVQ KFGEIYGKIE SSKREQMMEL  300
ERMRIEFQMD LELQKKQILD RAQAEIAKIR EEDDDEEDED NSDDDDVSGG NISK

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU288368	0.0	GU288368.1 Populus balsamifera isolate FRE01 haplotype A unknown protein gene, partial sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011043444.1	0.0	PREDICTED: trihelix transcription factor ASIL2
TrEMBL	A0A2I4KKG2	0.0	A0A2I4KKG2_POPTR; Trihelix family protein
STRING	POPTR_0018s06120.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2441	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	2e-83	Trihelix family protein