PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG004828.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 303aa    MW: 33931.2 Da    PI: 8.3831
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG004828.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.8e-19137191256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ +++k+q  +Lee F+++++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  CCG004828.1 137 RKKLRLSKDQAAILEESFKEHNTLNPKQKMGLAKQLGLRPRQVEVWFQNRRARTK 191
                  788899***********************************************98 PP
2HD-ZIP_I/II129.81.1e-41137226191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlsk+q+++LEesF+e+++L+p++K+ la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  CCG004828.1 137 RKKLRLSKDQAAILEESFKEHNTLNPKQKMGLAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-AL 226
                  69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046183.8E-342110IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.601.2E-18113194IPR009057Homeodomain-like
SuperFamilySSF466891.09E-18123194IPR009057Homeodomain-like
PROSITE profilePS5007117.443133193IPR001356Homeobox domain
SMARTSM003892.4E-15135197IPR001356Homeobox domain
PfamPF000466.5E-17137191IPR001356Homeobox domain
CDDcd000861.11E-15137194No hitNo description
PRINTSPR000312.8E-5164173IPR000047Helix-turn-helix motif
PROSITE patternPS000270168191IPR017970Homeobox, conserved site
PRINTSPR000312.8E-5173189IPR000047Helix-turn-helix motif
CDDcd146860.00699186225No hitNo description
PfamPF021832.3E-11193227IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.2E-27193236IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009826Biological Processunidimensional cell growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MMAGKEDLGL SLSLSVPQNQ HSLQLNLMPS LVPSTASSSI SGFHPQKSPW NVTFPSSDPN  60
SNSYRAETRS LLRGIDVNRL PSTADCEEEA GVSSPNSTIS SISGKRSERE GINGDEHEME  120
RDSSRGISDE EDGETSRKKL RLSKDQAAIL EESFKEHNTL NPKQKMGLAK QLGLRPRQVE  180
VWFQNRRART KLKQTEVDCE FLKRCCENLT EENRRLQKEV QELRALKLSP QFYMQMTPPT  240
TLTMCPSCER VAAPPTASYT VDARSHPHVI GPTRHRPILM NPWAPDAPVT RGPTPFDAIR  300
PRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135141SRKKLRL
2185193RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00550DAPTransfer from AT5G47370Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011047615.10.0PREDICTED: homeobox-leucine zipper protein HAT4
SwissprotP466011e-118HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBLB9MUS10.0B9MUS1_POPTR; Uncharacterized protein
STRINGPOPTR_0001s15490.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.11e-116homeobox protein 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]