PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG004790.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Trihelix

Protein Properties

Length: 482aa MW: 53692.8 Da PI: 8.5036

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG004790.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.1	1.5e-15	17	80	1	68
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 +Wt++e laLi+a+ +++ +++rg+l++++We+v++++ +s+ qC++k+e+l+kry+ +k+ CCG004790.1 17 CWTQDESLALIKAYCDKWYSVNRGNLRAADWEAVAAAVP----PKSSLQCRHKIEKLRKRYRVEKQKC 80 8*********************************997....589**************999865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.6E-15	16	100	No hit	No description
PROSITE profile	PS50090	6.214	18	70	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
METTLSCATP KRVPPPCWTQ DESLALIKAY CDKWYSVNRG NLRAADWEAV AAAVPPKSSL 60 QCRHKIEKLR KRYRVEKQKC LEYPGRFFSS WDLFPLLDSL EIGSLGSKVD QEIDKGHGVG 120 DGFRVKTLGE RYLLTSQQNG KTNGDLDPDE DFGLDPDLAF RATKYSKVHG GFNVHGDYGS 180 GFGFKSVANK NLVSVAFRPK DYVGFKGNLT ANVGLNCDNG GEFGYKVEKT QGDRKVTPQG 240 VRLPDYKMIA NNYGSYARDF TKVVHSYGGF PLKFLGDGNL AFHGLNPKNY NTIDGKPPPD 300 FCDDDDYVEI DCRNDKRDEF GKKVTNGWSH SRTGFRPKNC GAIDGNSMSN ARSRAVNGSV 360 NVGMNGIGDG VKRETDPISL LVSAIEQATE SFVKVEMMKM DMASEIEKMR MEMGLKHNQM 420 ILESQQRIVD TLAKAMLEKK KEREKVEVLP PNSSRNGYSR VPAVDFERIG KSIVKEGEAC 480 FT

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

METTLSCATP KRVPPPCWTQ DESLALIKAY CDKWYSVNRG NLRAADWEAV AAAVPPKSSL  60
QCRHKIEKLR KRYRVEKQKC LEYPGRFFSS WDLFPLLDSL EIGSLGSKVD QEIDKGHGVG  120
DGFRVKTLGE RYLLTSQQNG KTNGDLDPDE DFGLDPDLAF RATKYSKVHG GFNVHGDYGS  180
GFGFKSVANK NLVSVAFRPK DYVGFKGNLT ANVGLNCDNG GEFGYKVEKT QGDRKVTPQG  240
VRLPDYKMIA NNYGSYARDF TKVVHSYGGF PLKFLGDGNL AFHGLNPKNY NTIDGKPPPD  300
FCDDDDYVEI DCRNDKRDEF GKKVTNGWSH SRTGFRPKNC GAIDGNSMSN ARSRAVNGSV  360
NVGMNGIGDG VKRETDPISL LVSAIEQATE SFVKVEMMKM DMASEIEKMR MEMGLKHNQM  420
ILESQQRIVD TLAKAMLEKK KEREKVEVLP PNSSRNGYSR VPAVDFERIG KSIVKEGEAC  480
FT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011047556.1	0.0	PREDICTED: uncharacterized protein LOC105141877
TrEMBL	U5GPJ6	0.0	U5GPJ6_POPTR; Uncharacterized protein
STRING	POPTR_0001s15070.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13797	14	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	3e-24	Trihelix family protein