PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG004689.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LFY
Protein Properties Length: 377aa    MW: 42677.3 Da    PI: 8.2009
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG004689.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY621.91.1e-18913631386
      FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifr 98 
                  mdpeaf+aslfkwd+ra++ + p+rlle    +++p +aa a+  r+l +leelf+ayG+ry+t+akiaelGftv+tL+dmkdeeld++m+sls+ifr
  CCG004689.1   1 MDPEAFTASLFKWDTRAMV-PHPNRLLEMVPPPQQPPAAAFAVRPRELCGLEELFQAYGIRYYTAAKIAELGFTVNTLLDMKDEELDEMMNSLSQIFR 97 
                  9**************9766.77789988888888887778888888899************************************************* PP

      FLO_LFY  99 ldllvGeryGikaavraerrrleeeeaekkrrkllsedeet.aldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseeekkkaskkkqkr 195
                  +dllvGeryGikaavraerrrl+ee+   +rr+lls d++t +ldalsqeg seepvq+ keaagsgg+g  ++e+vaa e      +kk+     ++
  CCG004689.1  98 WDLLVGERYGIKAAVRAERRRLDEED--PRRRQLLSGDNNTnTLDALSQEGFSEEPVQQDKEAAGSGGRG--TWEAVAAGE------RKKQ-P--GRK 182
                  ************************88..88888998887666************************9998..999999983......3333.1..222 PP

      FLO_LFY 196 kkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkag 293
                  k ++++    d       d d+e +g    erqrehPfivtepgevargkknGLDYLf+LyeqCr+fL+qvq+iakerGekcPtkvtnqvfryakkag
  CCG004689.1 183 KGQRKV---VD------LDGDDE-HGGAICERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFLIQVQSIAKERGEKCPTKVTNQVFRYAKKAG 270
                  222221...11......122233.344467******************************************************************** PP

      FLO_LFY 294 asyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerskas 386
                  asyinkPkmrhYvhCYalhcLde+asnalrrafkergenvGawrqacykplvaia+rqgwdid++fnahprL+iWYvPtkLrqLC++er++a+
  CCG004689.1 271 ASYINKPKMRHYVHCYALHCLDEDASNALRRAFKERGENVGAWRQACYKPLVAIASRQGWDIDSIFNAHPRLAIWYVPTKLRQLCYAERNSAT 363
                  *****************************************************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016981.6E-2061362IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MDPEAFTASL FKWDTRAMVP HPNRLLEMVP PPQQPPAAAF AVRPRELCGL EELFQAYGIR  60
YYTAAKIAEL GFTVNTLLDM KDEELDEMMN SLSQIFRWDL LVGERYGIKA AVRAERRRLD  120
EEDPRRRQLL SGDNNTNTLD ALSQEGFSEE PVQQDKEAAG SGGRGTWEAV AAGERKKQPG  180
RKKGQRKVVD LDGDDEHGGA ICERQREHPF IVTEPGEVAR GKKNGLDYLF HLYEQCRDFL  240
IQVQSIAKER GEKCPTKVTN QVFRYAKKAG ASYINKPKMR HYVHCYALHC LDEDASNALR  300
RAFKERGENV GAWRQACYKP LVAIASRQGW DIDSIFNAHP RLAIWYVPTK LRQLCYAERN  360
SATSSSSVSG TGAHLPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1082033734186PROTEIN LEAFY
2vy2_A1e-1082033734186PROTEIN LEAFY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKX2798850.0KX279885.1 Populus alba cultivar 6K10 LEAFY transcription factor (LFY) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011040286.10.0PREDICTED: floricaula/leafy homolog
SwissprotO040640.0FLLH_POPTR; Floricaula/leafy homolog
TrEMBLA0A173GY920.0A0A173GY92_POPAL; LEAFY transcription factor
TrEMBLG1FLG30.0G1FLG3_POPTN; Leafy protein
STRINGPOPTR_0015s11820.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-152floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Tuskan GA, et al.
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science, 2006. 313(5793): p. 1596-604
    [PMID:16973872]