PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG004539.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ARR-B | ||||||||
Protein Properties | Length: 679aa MW: 74104.2 Da PI: 5.9178 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.3 | 8.2e-29 | 208 | 261 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl CCG004539.1 208 KPRVVWSVELHQQFVAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 261 79*******************.********************************8 PP | |||||||
2 | Response_reg | 77.7 | 4.2e-26 | 29 | 137 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl+vdD+p+ + +l+++l+ +y ev+ + +e al ll+e++ +D+++ D+ mp+mdG++ll++i e +lp+i+++a + ++ + + + Ga CCG004539.1 29 VLVVDDDPTCLVILEKMLRTCRY-EVTKCNRAEIALSLLRENKngYDIVISDVHMPDMDGFKLLERIGLEM-DLPVIMMSADDGKNVVMKGVTHGAC 123 89*********************.***************999999**********************6654.8************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ +e+l + CCG004539.1 124 DYLIKPIRIEALKN 137 **********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 1.1E-183 | 9 | 663 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 7.2E-42 | 26 | 174 | No hit | No description |
SuperFamily | SSF52172 | 3.27E-35 | 26 | 151 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 2.0E-29 | 27 | 139 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.532 | 28 | 143 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 3.3E-23 | 29 | 137 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 8.58E-27 | 30 | 142 | No hit | No description |
SuperFamily | SSF46689 | 3.58E-20 | 205 | 265 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.048 | 205 | 264 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-30 | 207 | 266 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.7E-25 | 208 | 261 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.8E-8 | 210 | 260 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0071368 | Biological Process | cellular response to cytokinin stimulus | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 679 aa Download sequence Send to blast |
MLNLGYCKGS MSTASSGGVS DQFPAGLRVL VVDDDPTCLV ILEKMLRTCR YEVTKCNRAE 60 IALSLLRENK NGYDIVISDV HMPDMDGFKL LERIGLEMDL PVIMMSADDG KNVVMKGVTH 120 GACDYLIKPI RIEALKNIWQ HVVRKRKNEW KDLEQSGSVE EGGDRQQKQS EDADYSSSAN 180 EGSWKNSKRR KDEEEEADER DDTSTLKKPR VVWSVELHQQ FVAAVNQLGI DKAVPKKILE 240 LMNVPGLTRE NVASHLQKYR LYLRRLSGVS QHQSGMGNSF ISPQEASYGP LSSLNGLDLQ 300 TLAAAGQIPA QSLATLQAAG LGRSTAKPRM PMSIVDQRNL FSFENPKLRF GEGQQQHLNN 360 GKQINLLHGI PTTMEPKQLA DLHHSAQSLG SMNMQLNAHG DQSGSLLMQM SQQQSRGQVL 420 NETSSSQVPR LPSSIGQPIV TNAIASGVLA RTGLAENGRG TGFSPVSQSS PTLNFPLNTT 480 AELTASSFAL GSAPGVPSLT SKGTFPEDIN SEMKGPGGFI MPSYDIFSDV QNHRSHDWEL 540 QNVGIAFNGS QQSNSLQSRV DVASSVLAHQ GFSSSQSNGQ GRNISAVGKP IFSAGDATDR 600 MNAQSLGQPL NTFFAENLVR VKTERVPDAN LQTTLFNEQF DQEDLMSALL KQQQQQQAGI 660 GPAEIEFDFD GYSLDNIPV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-22 | 207 | 267 | 4 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00054 | PBM | Transfer from AT4G16110 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FN908139 | 0.0 | FN908139.1 Populus x canadensis mRNA for putative B-type response regulator 13 (rr13 gene), cultivar Dorskamp. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011046387.1 | 0.0 | PREDICTED: two-component response regulator ARR2-like isoform X2 | ||||
Swissprot | Q9ZWJ9 | 0.0 | ARR2_ARATH; Two-component response regulator ARR2 | ||||
TrEMBL | A0A2K1YLL3 | 0.0 | A0A2K1YLL3_POPTR; Two-component response regulator | ||||
STRING | POPTR_0010s00320.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3958 | 34 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 0.0 | response regulator 2 |