PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG004406.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRAS

Protein Properties

Length: 670aa MW: 75902.9 Da PI: 6.3849

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG004406.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	388.1	9.9e-119	296	667	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL+ cAeav++++ + a lL++++++a p+gd+mqRla +f+ +L+arla+s++++ykal +++ts +++l+a+++ ++P+ k+s++ CCG004406.1 296 LRTLLTLCAEAVATDNRRSAIDLLKQIRQNAPPTGDAMQRLANVFADGLEARLAGSGTQIYKALISRPTS---AADVLKAYHMILTACPFRKLSNFFS 390 5789***************************************************************9...9******************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N +I + +e+++rvHi+Df+i++G+QWp+L+q L+sRp+gpp+lRiTg++ p++g +e++eetg+rL+++A++++vpfefn+ +a++++++++e+L CCG004406.1 391 NITIKNIAENATRVHIVDFGIMYGFQWPCLIQRLSSRPGGPPKLRITGIDLPNPGfrPAERVEETGRRLENYANTFKVPFEFNA-IAQKWDTIQIEDL 487 **************************************************9*************************.7******** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 +++++E+l+Vn+ ++l +llde+v +es+rd+vL+l+++++P+v+++ + ++++ F +rf eal ++s+lfd+lea++pre er+ Er ++g+ CCG004406.1 488 KIDRNEVLVVNSLFRLRNLLDETVVVESPRDTVLNLIRKMNPDVFIHGAVNGAYSAPFFITRFREALFHFSTLFDMLEANVPREVPERVLFERDIFGW 585 ********************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 e++nv+acegaer+er et+++W++r+++aGF ++p++ ++ ++ak ++ + + + ++e s++l++gWk+r ++++S+W+ CCG004406.1 586 EAMNVIACEGAERIERPETYKQWQMRIQRAGFMQLPVNREIFTTAKERVQALYHKDFVIDEYSQWLLQGWKGRIVYALSSWK 667 *************************************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	67.481	270	647	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.4E-116	296	667	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 670 aa Download sequence Send to blast
MSQEVDSYED LDFSDVVLKY ISQMLMEEEM EDKTCMFQES SAALLAAEKS LYELIGEKYP 60 SSPKYPVPRF DQTRESPEKN HDLNCSNYTS STSRSSGSKL VDLGEYKFSR RASQFTPRSS 120 YSSGNSTVTV DGSVDSPVGP NMVAEIFRES ESVMQFKKGF EEASKFIPNG DLFTDLESNG 180 LFLKHPKEDA KDVLAMTEEK NENENYTDGL RRKKSPHLEE LALEGFRSNK QSAVYSESTA 240 SPADFDMVLL NCGRDESSIR AALHNGESKM AQHNGQAKGG KARGKRQGGK RNVVDLRTLL 300 TLCAEAVATD NRRSAIDLLK QIRQNAPPTG DAMQRLANVF ADGLEARLAG SGTQIYKALI 360 SRPTSAADVL KAYHMILTAC PFRKLSNFFS NITIKNIAEN ATRVHIVDFG IMYGFQWPCL 420 IQRLSSRPGG PPKLRITGID LPNPGFRPAE RVEETGRRLE NYANTFKVPF EFNAIAQKWD 480 TIQIEDLKID RNEVLVVNSL FRLRNLLDET VVVESPRDTV LNLIRKMNPD VFIHGAVNGA 540 YSAPFFITRF REALFHFSTL FDMLEANVPR EVPERVLFER DIFGWEAMNV IACEGAERIE 600 RPETYKQWQM RIQRAGFMQL PVNREIFTTA KERVQALYHK DFVIDEYSQW LLQGWKGRIV 660 YALSSWKPDS

Sequence ? help Back to Top

Protein Sequence Length: 670 aa Download sequence Send to blast

MSQEVDSYED LDFSDVVLKY ISQMLMEEEM EDKTCMFQES SAALLAAEKS LYELIGEKYP  60
SSPKYPVPRF DQTRESPEKN HDLNCSNYTS STSRSSGSKL VDLGEYKFSR RASQFTPRSS  120
YSSGNSTVTV DGSVDSPVGP NMVAEIFRES ESVMQFKKGF EEASKFIPNG DLFTDLESNG  180
LFLKHPKEDA KDVLAMTEEK NENENYTDGL RRKKSPHLEE LALEGFRSNK QSAVYSESTA  240
SPADFDMVLL NCGRDESSIR AALHNGESKM AQHNGQAKGG KARGKRQGGK RNVVDLRTLL  300
TLCAEAVATD NRRSAIDLLK QIRQNAPPTG DAMQRLANVF ADGLEARLAG SGTQIYKALI  360
SRPTSAADVL KAYHMILTAC PFRKLSNFFS NITIKNIAEN ATRVHIVDFG IMYGFQWPCL  420
IQRLSSRPGG PPKLRITGID LPNPGFRPAE RVEETGRRLE NYANTFKVPF EFNAIAQKWD  480
TIQIEDLKID RNEVLVVNSL FRLRNLLDET VVVESPRDTV LNLIRKMNPD VFIHGAVNGA  540
YSAPFFITRF REALFHFSTL FDMLEANVPR EVPERVLFER DIFGWEAMNV IACEGAERIE  600
RPETYKQWQM RIQRAGFMQL PVNREIFTTA KERVQALYHK DFVIDEYSQW LLQGWKGRIV  660
YALSSWKPDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	6e-50	303	670	26	382	Protein SCARECROW
5b3h_A	5e-50	303	670	25	381	Protein SCARECROW
5b3h_D	5e-50	303	670	25	381	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024463071.1	0.0	scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A2K1ZCG1	0.0	A0A2K1ZCG1_POPTR; Uncharacterized protein
STRING	POPTR_0008s05750.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein