 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | CCG004377.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
| Family | Dof | ||||||||
| Protein Properties | Length: 337aa MW: 35535.5 Da PI: 9.1949 | ||||||||
| Description | Dof family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-Dof | 124 | 4.9e-39 | 73 | 132 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
e alkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+
CCG004377.1 73 EMALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 132
6689*****************************************************975 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| ProDom | PD007478 | 6.0E-31 | 56 | 121 | IPR003851 | Zinc finger, Dof-type |
| Pfam | PF02701 | 1.4E-32 | 75 | 130 | IPR003851 | Zinc finger, Dof-type |
| PROSITE profile | PS50884 | 29.544 | 76 | 130 | IPR003851 | Zinc finger, Dof-type |
| PROSITE pattern | PS01361 | 0 | 78 | 114 | IPR003851 | Zinc finger, Dof-type |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 337 aa Download sequence Send to blast |
MVFSSIPVYL DPPNWQQQHN NQPPAGAGNE NTQLPPPSGP PTGGGDGGGT TAGSIRPGSM 60 TDRARLAKIP LPEMALKCPR CESTNTKFCY FNNYSLTQPR HFCKTCRRYW TRGGALRNVP 120 VGGGCRRNKR SKGSGRSKSP VKAGSSSSGG LSSNGGTTDI TGNMATPPPL LPMFPPLHHL 180 GDYNSPDIGL NFGGILPSVG ATAGGGGGVE FQMENSTSSN SVGGSVLSSG LVEQWRLQQV 240 QHQVQQYPFL SNLEPSSGLY SFEGGGIGPS NYSGQIRSRP LDSTGVTQLA SVKMEENQGL 300 NLSRNFLGIS GNDQYWGGNN AWTDLPGFTS SSTSHLL |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 37 | 49 | SGPPTGGGDGGGT |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_011027185.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.6-like isoform X2 | ||||
| TrEMBL | B9NBE6 | 0.0 | B9NBE6_POPTR; Uncharacterized protein | ||||
| STRING | POPTR_0010s21240.1 | 0.0 | (Populus trichocarpa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF656 | 34 | 143 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G55370.2 | 1e-44 | OBF-binding protein 3 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|