PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG004286.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 486aa    MW: 53387.8 Da    PI: 8.4579
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG004286.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56.1e-17167216155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  CCG004286.1 167 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 216
                  78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-16167225IPR016177DNA-binding domain
PfamPF008475.6E-9167216IPR001471AP2/ERF domain
PROSITE profilePS5103217.794168224IPR001471AP2/ERF domain
SMARTSM003804.1E-32168230IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-17168225IPR001471AP2/ERF domain
CDDcd000181.32E-11168226No hitNo description
SMARTSM003801.3E-5259307IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-5260302IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MLDLNLGITS SDSCCEDNNK NNMMVIVDVE NHQKEEAAAS RTQQMEDSAT SNSSITNTTE  60
DENSSNNSNS AFIFDILKKD GNFTNTSTIN ASKETNRNCD FTTQQLFPES TGLELNFQPG  120
LAVASATRPQ WLKLSQMGSS PEAEPKNVQQ KQQQARKSRR GPRSRSSQYR GVTFYRRTGR  180
WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGVDAD INFNSSDYEE DMKQMKNLSK  240
EEFVHILRRQ STGFSRGSSN RGVTLHKGGR WDARIGQFLG KKAYDKAALE FNGREAVTNF  300
EPSVCKGDAI SDPSNGGSGH NLDLSLGISQ PSNDPKGNDS VGDSHCRYGG CEIPRKERQV  360
VEGSTAAAHM GFQTLHGSPM ASKNLPAWSG MYPGLLSSYE ERTAEKKVEA VSSPRFSSWP  420
WLINGSNNVV ATMSQLSVAA SSGFSSTITA SSATLPFNQQ NHFASNRRLA ASTTSFPNPS  480
LYSYKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027030.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X4
SwissprotB8AMA91e-82AP22_ORYSI; APETALA2-like protein 2
TrEMBLB9HU090.0B9HU09_POPTR; Uncharacterized protein
STRINGPOPTR_0010s22320.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.11e-73related to AP2.7