PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG004282.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NF-YB | ||||||||
Protein Properties | Length: 223aa MW: 24286.7 Da PI: 5.114 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 83.6 | 2.4e-26 | 25 | 73 | 1 | 49 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtse 49 vreqdr+lPian+srimkk+lPan+ki+kdak+tvqecvsefisfvts+ CCG004282.4 25 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFVTSD 73 69*********************************************86 PP | |||||||
2 | NF-YB | 68.5 | 1.2e-21 | 100 | 144 | 52 | 96 |
NF-YB 52 dkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 cq+ekrktingddllwa+atlGfe+y++plkvyl++yre+ e CCG004282.4 100 LECQKEKRKTINGDDLLWAMATLGFEEYIDPLKVYLARYREVVLE 144 57***************************************9655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.3E-42 | 20 | 142 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 4.19E-16 | 23 | 74 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.3E-16 | 31 | 73 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 3.1E-16 | 59 | 77 | No hit | No description |
SuperFamily | SSF47113 | 3.14E-13 | 102 | 143 | IPR009072 | Histone-fold |
PRINTS | PR00615 | 3.1E-16 | 102 | 120 | No hit | No description |
PRINTS | PR00615 | 3.1E-16 | 121 | 139 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MADNPTSPAA GSHESGGEQS PRSGVREQDR YLPIANISRI MKKALPANGK IAKDAKDTVQ 60 ECVSEFISFV TSDGILWRTV FGGFGKMGCL LLFGNADGTL ECQKEKRKTI NGDDLLWAMA 120 TLGFEEYIDP LKVYLARYRE VVLESNLLTL LFSLVLLDDA MPQLEGDAKG SARGGDGSSK 180 REAVGGLPAQ NAQVNFCKHA LEVDYSVLVE VSPAYHIVFF LHL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n1j_A | 3e-38 | 26 | 140 | 3 | 93 | NF-YB |
4awl_B | 3e-38 | 26 | 140 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4csr_A | 3e-38 | 26 | 140 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024465216.1 | 5e-89 | nuclear transcription factor Y subunit B-1 isoform X4 | ||||
Swissprot | Q8VYK4 | 2e-60 | NFYB8_ARATH; Nuclear transcription factor Y subunit B-8 | ||||
TrEMBL | A0A2K1YY36 | 3e-87 | A0A2K1YY36_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s22360.1 | 6e-87 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2545 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38880.8 | 1e-62 | nuclear factor Y, subunit B1 |
Publications ? help Back to Top | |||
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