PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG004197.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 539aa    MW: 59121.7 Da    PI: 7.7852
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG004197.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.11.8e-33243299259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +DgynWrKYGqK++kgse+prsYY+Ct+ +Cpvkkkvers+ d++++ei+Y+g+Hnh+
  CCG004197.1 243 HDGYNWRKYGQKPIKGSEYPRSYYKCTHLNCPVKKKVERSS-DGQITEIIYKGQHNHD 299
                  7****************************************.***************7 PP

2WRKY106.51.4e-33425483159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+a dpk+v++tYeg+Hnh+
  CCG004197.1 425 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERAAADPKAVVTTYEGKHNHD 483
                  59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081125.029237301IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.2E-29239301IPR003657WRKY domain
SuperFamilySSF1182902.09E-26241301IPR003657WRKY domain
SMARTSM007741.7E-37242300IPR003657WRKY domain
PfamPF031068.8E-26244299IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.9E-37410485IPR003657WRKY domain
SuperFamilySSF1182901.96E-29417485IPR003657WRKY domain
PROSITE profilePS5081138.641420485IPR003657WRKY domain
SMARTSM007748.1E-40425484IPR003657WRKY domain
PfamPF031064.3E-26426483IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MAEKQENLTT APAPARPTIT LPPRPSMEAF FTGGLSPGPM TLVSSFFADS PYPESDYRSF  60
SQLLAGAMAS PIARPAFFND HSIPNNNTNS ATATATSSKD DGSNSNLGFK QSRPMNLVVA  120
RSPLFTVPPG LSPSGLLNSP GFFSPQSPFG MSHQQALAQV TAQAALLAQS QMHMHAQYQP  180
SSVTAPTELL TRHPSFNPGE ALQQQQQMPH STSDTQNSVV ELTEFSHSER KYQPPAAVDK  240
PTHDGYNWRK YGQKPIKGSE YPRSYYKCTH LNCPVKKKVE RSSDGQITEI IYKGQHNHDL  300
PQPNKRSKDG NDSNGSMHLQ SKPEVDSQAQ AGNAINLTET VPAHSVIGRD QESTQADPLE  360
PPGPSDSEEA GDAAVQEEER GDDEPNPKRR QCRQVDVVTS EATLPHKTVT EPKIIVQTRS  420
EVDLLDDGYR WRKYGQKVVK GNPHPRSYYK CTSAGCNVRK HVERAAADPK AVVTTYEGKH  480
NHDVPAARNS SHNTANTSAS QVKPQKVMTE KHPLHKGMEF GNNDQRPVLL QLKEEKIAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-40244486878Probable WRKY transcription factor 4
2lex_A2e-40244486878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035813.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9ZQ701e-147WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A2K1X5D20.0A0A2K1X5D2_POPTR; Uncharacterized protein
STRINGPOPTR_0017s12430.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-124WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]