PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG004197.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 539aa MW: 59121.7 Da PI: 7.7852 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106.1 | 1.8e-33 | 243 | 299 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK++kgse+prsYY+Ct+ +Cpvkkkvers+ d++++ei+Y+g+Hnh+ CCG004197.1 243 HDGYNWRKYGQKPIKGSEYPRSYYKCTHLNCPVKKKVERSS-DGQITEIIYKGQHNHD 299 7****************************************.***************7 PP | |||||||
2 | WRKY | 106.5 | 1.4e-33 | 425 | 483 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+a dpk+v++tYeg+Hnh+ CCG004197.1 425 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERAAADPKAVVTTYEGKHNHD 483 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 25.029 | 237 | 301 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.2E-29 | 239 | 301 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-26 | 241 | 301 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.7E-37 | 242 | 300 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.8E-26 | 244 | 299 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 8.9E-37 | 410 | 485 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-29 | 417 | 485 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.641 | 420 | 485 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.1E-40 | 425 | 484 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.3E-26 | 426 | 483 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 539 aa Download sequence Send to blast |
MAEKQENLTT APAPARPTIT LPPRPSMEAF FTGGLSPGPM TLVSSFFADS PYPESDYRSF 60 SQLLAGAMAS PIARPAFFND HSIPNNNTNS ATATATSSKD DGSNSNLGFK QSRPMNLVVA 120 RSPLFTVPPG LSPSGLLNSP GFFSPQSPFG MSHQQALAQV TAQAALLAQS QMHMHAQYQP 180 SSVTAPTELL TRHPSFNPGE ALQQQQQMPH STSDTQNSVV ELTEFSHSER KYQPPAAVDK 240 PTHDGYNWRK YGQKPIKGSE YPRSYYKCTH LNCPVKKKVE RSSDGQITEI IYKGQHNHDL 300 PQPNKRSKDG NDSNGSMHLQ SKPEVDSQAQ AGNAINLTET VPAHSVIGRD QESTQADPLE 360 PPGPSDSEEA GDAAVQEEER GDDEPNPKRR QCRQVDVVTS EATLPHKTVT EPKIIVQTRS 420 EVDLLDDGYR WRKYGQKVVK GNPHPRSYYK CTSAGCNVRK HVERAAADPK AVVTTYEGKH 480 NHDVPAARNS SHNTANTSAS QVKPQKVMTE KHPLHKGMEF GNNDQRPVLL QLKEEKIAV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-40 | 244 | 486 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-40 | 244 | 486 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011035813.1 | 0.0 | PREDICTED: probable WRKY transcription factor 3 | ||||
Swissprot | Q9ZQ70 | 1e-147 | WRKY3_ARATH; Probable WRKY transcription factor 3 | ||||
TrEMBL | A0A2K1X5D2 | 0.0 | A0A2K1X5D2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0017s12430.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1545 | 34 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03340.1 | 1e-124 | WRKY DNA-binding protein 3 |
Publications ? help Back to Top | |||
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