PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG004192.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 400aa MW: 44398.9 Da PI: 4.2929 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.5e-19 | 45 | 94 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g CCG004192.1 45 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 94 789******.7*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.39E-32 | 44 | 101 | No hit | No description |
SMART | SM00380 | 3.8E-35 | 45 | 108 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.559 | 45 | 102 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.8E-14 | 45 | 94 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-27 | 45 | 101 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.79E-19 | 45 | 102 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.8E-8 | 46 | 57 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-8 | 68 | 84 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MARKRKVSES VEDKNSSEGT MAWDDMVKEA AAAAALGGAR RARKRFVGVR QRPSGRWVAE 60 IKDTIQKIRV WLGTFDTAEE AARAYDEAAC LLRGANTRTN FWPCSPTSST TPALPSKITN 120 LLLQRLKARN NSCDPSKTSQ PYNLQQKLVE EYREPATDFS DTQFTDFLDH PDDYPMCNDN 180 TINTNASALD CMTTSLGPCL TEKEDSGGKE WDFDYSWSDV ALSSSGDGNN LGGEGEEDGE 240 EEEEGNDIGA LDFHFFDDVG SPFYYSPFEI AEDIEEPVEP ECYGDEPSML KAAMKRMKYE 300 RKFSASLYAF NGIPECLKLK LGSGNAKGKG RSDQLTELRN ACNGRKEGNR AEEESLEVMQ 360 KEDDYSQSST EMGSSSSSLI NDGELSLWNT LDLPPICFIN |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF155958 | 0.0 | EF155958.1 Populus trichocarpa WIN1-like protein (WIN1L) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011035804.1 | 0.0 | PREDICTED: uncharacterized protein LOC105133481 | ||||
TrEMBL | A0A2K1X592 | 0.0 | A0A2K1X592_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0017s12370.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3338 | 32 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 2e-21 | related to AP2 11 |