PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG004168.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Dof

Protein Properties

Length: 511aa MW: 55912.6 Da PI: 5.8032

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG004168.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.4	3.2e-38	150	210	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+++cprC+s++tkfCyynny+++qPr+fCk+C+r Wt+GG++rnvPvG+grrknk+s CCG004168.1 150 PDKIIPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQREWTAGGTMRNVPVGAGRRKNKNSA 210 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	147	207	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.9E-31	152	208	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.997	154	208	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	156	192	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence Send to blast
MYGVMLEAMA FKLFGKTIQV PEISVTTATT TDDDDDDDSQ DQDRPSCANS SLDETNITDD 60 YDNNDKRDHG EEDRETDDKD SVGKTPIENQ EDGASPVAAK ESSNLDATSG TSENPKTPSI 120 EKESTALKTS NTEEEQSDTS NSQEKTLKKP DKIIPCPRCN SMDTKFCYYN NYNVNQPRHF 180 CKNCQREWTA GGTMRNVPVG AGRRKNKNSA SHYRHITIPE ALQNGRADVP NGVHHPSLKT 240 NGTVLTFGSD APLHESMASV LNLADKTMLN CTMNGFHKPE ALRVPVSYGG GENGDDHSNG 300 SSVTVSNSSD EAGKSVSKES AMQNYQGYPP QIPCFPGVPW PYPWNSAHWR SPVPRPAFCP 360 SSFPMPFYPA AAYWGCTVPG AWNIPWLPQP SSPKQTSSSS DPNSPTLGKH SRDENVLKPS 420 NSKEELVKQN NTERCLWIPK TLRIDDPGAA AKSSIWTTLG IKNDKPGSFG GRGLFKAFDS 480 KVEKNRAAET SPVLHANPAA LSRSLKFQES S

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence Send to blast

MYGVMLEAMA FKLFGKTIQV PEISVTTATT TDDDDDDDSQ DQDRPSCANS SLDETNITDD  60
YDNNDKRDHG EEDRETDDKD SVGKTPIENQ EDGASPVAAK ESSNLDATSG TSENPKTPSI  120
EKESTALKTS NTEEEQSDTS NSQEKTLKKP DKIIPCPRCN SMDTKFCYYN NYNVNQPRHF  180
CKNCQREWTA GGTMRNVPVG AGRRKNKNSA SHYRHITIPE ALQNGRADVP NGVHHPSLKT  240
NGTVLTFGSD APLHESMASV LNLADKTMLN CTMNGFHKPE ALRVPVSYGG GENGDDHSNG  300
SSVTVSNSSD EAGKSVSKES AMQNYQGYPP QIPCFPGVPW PYPWNSAHWR SPVPRPAFCP  360
SSFPMPFYPA AAYWGCTVPG AWNIPWLPQP SSPKQTSSSS DPNSPTLGKH SRDENVLKPS  420
NSKEELVKQN NTERCLWIPK TLRIDDPGAA AKSSIWTTLG IKNDKPGSFG GRGLFKAFDS  480
KVEKNRAAET SPVLHANPAA LSRSLKFQES S

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011035770.1	0.0	PREDICTED: cyclic dof factor 2
TrEMBL	B9IJZ2	0.0	B9IJZ2_POPTR; Uncharacterized protein
STRING	POPTR_0017s12080.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-102	cycling DOF factor 2