PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG004141.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 604aa    MW: 68120.5 Da    PI: 7.5138
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG004141.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.5e-192782156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 ++  +++t +q+ +Le++F+++++p++++r++L+++lgL+ +q+k+WFqNrR++ k
  CCG004141.1 27 KKAYHRHTCQQILQLEKFFKECPHPNEKQRRQLSRELGLEAKQIKFWFQNRRTQAK 82
                 6778899**********************************************988 PP
2START123.23.4e-392364563206
                  HHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
        START   3 aeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                  a  a++el+ +  ++ep+W ks+       + ++++  + + +   +     ++e +++s+ v+m+ ++lv  +ld + +W   ++    +a t++v+
  CCG004141.1 236 AAGAMDELIGLLRVNEPFWIKSPsdgrfvlDRLIYERIYPRAAH--FiscnARVESSKDSATVTMPGMDLVDMFLDPN-KWVDLFPtivtEARTIKVL 330
                  66799******************999877777777777777644..366889**************************.99999988888******** PP

                  CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
        START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                  + g      g lq m+ ++  lsplv  R+f+f+R ++ql+ g+wvi+dvS d  ++   s+s  +a +lpSg++i++++ng sk++wvehv+ ++r+
  CCG004141.1 331 EAGtvgnrhGSLQMMYEQMHILSPLVRpREFYFLRLCQQLEPGQWVIADVSYDYLKESG-SPS--CAWRLPSGCMIQDMPNGCSKIIWVEHVEANDRI 425
                  ************************9866*************************999966.555..566****************************** PP

                  X.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 177 p.hwllrslvksglaegaktwvatlqrqcek 206
                    h l+r l+  ++a ga +w a lqr ce+
  CCG004141.1 426 QtHRLYRDLICGSYAYGAERWIASLQRICER 456
                  99***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.61E-191484IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-201586IPR009057Homeodomain-like
PROSITE profilePS5007117.22484IPR001356Homeobox domain
SMARTSM003896.8E-162688IPR001356Homeobox domain
PfamPF000461.1E-162782IPR001356Homeobox domain
CDDcd000866.19E-162785No hitNo description
PROSITE patternPS0002705982IPR017970Homeobox, conserved site
PROSITE profilePS5084838.007225459IPR002913START domain
SuperFamilySSF559613.98E-29226457No hitNo description
CDDcd088756.12E-100230455No hitNo description
SMARTSM002343.4E-26234456IPR002913START domain
PfamPF018523.0E-32238456IPR002913START domain
Gene3DG3DSA:3.30.530.201.9E-7329420IPR023393START-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MELQMGNNGG ASGDEHYEDF NSGNKGKKAY HRHTCQQILQ LEKFFKECPH PNEKQRRQLS  60
RELGLEAKQI KFWFQNRRTQ AKAQSERSDN SVHRTENERI HCENLAIREA MKNVICPACG  120
GPPLGEEERQ LNLQKLRQEN DRLREEASLD FFFNSPFHEK VSILLAKFIG KPKSQIDLLT  180
SDAGSSQGEL PTFVQNQRMG NPGIDLERNP GSDISHLAYR LEGIPDMENA LMAETAAGAM  240
DELIGLLRVN EPFWIKSPSD GRFVLDRLIY ERIYPRAAHF ISCNARVESS KDSATVTMPG  300
MDLVDMFLDP NKWVDLFPTI VTEARTIKVL EAGTVGNRHG SLQMMYEQMH ILSPLVRPRE  360
FYFLRLCQQL EPGQWVIADV SYDYLKESGS PSCAWRLPSG CMIQDMPNGC SKIIWVEHVE  420
ANDRIQTHRL YRDLICGSYA YGAERWIASL QRICERLAFS TAVPPRELGG VVTSHEGRKS  480
IVDLAHRMVK IFSSSLGMSG KLDSRQLSEG NNSGVRVAIC KNAEQGQPIG TVVSAAASFW  540
LPLSPQNVFN FFKAEKSRTQ WDILSNGNPV REISHISNGA DPGNCISIIR VISHPFSPIL  600
VCRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2755391e-164GU275539.1 Populus balsamifera isolate NWL07 haplotype B unknown gene, partial sequence.
GenBankGU2755401e-164GU275540.1 Populus balsamifera isolate POR11 haplotype A unknown gene, partial sequence.
GenBankGU2755411e-164GU275541.1 Populus balsamifera isolate POR11 haplotype B unknown gene, partial sequence.
GenBankGU2755421e-164GU275542.1 Populus balsamifera isolate GIL14 haplotype A unknown gene, partial sequence.
GenBankGU2755431e-164GU275543.1 Populus balsamifera isolate GIL14 haplotype B unknown gene, partial sequence.
GenBankGU2755441e-164GU275544.1 Populus balsamifera isolate KUU07 haplotype A unknown gene, partial sequence.
GenBankGU2755451e-164GU275545.1 Populus balsamifera isolate KUU07 haplotype B unknown gene, partial sequence.
GenBankGU2755461e-164GU275546.1 Populus balsamifera isolate MGR10 haplotype A unknown gene, partial sequence.
GenBankGU2755471e-164GU275547.1 Populus balsamifera isolate MGR10 haplotype B unknown gene, partial sequence.
GenBankGU2755501e-164GU275550.1 Populus balsamifera isolate WHR03 haplotype A unknown gene, partial sequence.
GenBankGU2755521e-164GU275552.1 Populus balsamifera isolate FRE01 haplotype A unknown gene, partial sequence.
GenBankGU2755541e-164GU275554.1 Populus balsamifera isolate GAL12 haplotype A unknown gene, partial sequence.
GenBankGU2755561e-164GU275556.1 Populus balsamifera isolate HAY07 haplotype A unknown gene, partial sequence.
GenBankGU2755571e-164GU275557.1 Populus balsamifera isolate HAY07 haplotype B unknown gene, partial sequence.
GenBankGU2755581e-164GU275558.1 Populus balsamifera isolate LOV02 haplotype A unknown gene, partial sequence.
GenBankGU2755591e-164GU275559.1 Populus balsamifera isolate LOV02 haplotype B unknown gene, partial sequence.
GenBankGU2755601e-164GU275560.1 Populus balsamifera isolate RNA13 haplotype A unknown gene, partial sequence.
GenBankGU2755611e-164GU275561.1 Populus balsamifera isolate RNA13 haplotype B unknown gene, partial sequence.
GenBankGU2755621e-164GU275562.1 Populus balsamifera isolate STL13 haplotype A unknown gene, partial sequence.
GenBankGU2755631e-164GU275563.1 Populus balsamifera isolate STL13 haplotype B unknown gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038413.10.0PREDICTED: homeobox-leucine zipper protein HDG11-like
TrEMBLA0A2K2AR950.0A0A2K2AR95_POPTR; Uncharacterized protein
STRINGPOPTR_0017s01400.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11