PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG004120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 648aa MW: 70077.2 Da PI: 6.2492 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.5 | 1.8e-30 | 353 | 411 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ CCG004120.1 353 SDGCQWRKYGQKLAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTILITTYEGNHNHP 411 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.2E-33 | 337 | 413 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-27 | 346 | 413 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.044 | 347 | 413 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.4E-36 | 352 | 412 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.7E-27 | 354 | 411 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080169 | Biological Process | cellular response to boron-containing substance deprivation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 648 aa Download sequence Send to blast |
MAKGRGVLSI DSDLISTTSA FFLHNPPVLN SFPDQENIVN PKWKQLANTG RQTMDATSAR 60 SPPTTIQFPV KLINTNDARD DDDDEDDDDD NDSSLPSDNR RRTVIDEMDF FARKKHDDGY 120 PITNNSTDDL KDSGSPARLE LNVNTGLNLL TTNTSSDQSM VDDGISSNME YKRAKSELQL 180 AVLQAEVERM KVENLRLKGM LNQVTSNYNA LQMHLVTLTQ DQKSHHKNEQ HDGKNKNNGM 240 VPRQFMDLGL VAAAAGDTDD LSLSTSEGGR SRDRSRSPGN NVENNNEDGT LMFDQDKKGF 300 ARGADHREDS PGQGWASNKV ARLNSAKTID QTEATIRKAR VSVRARSEDA MISDGCQWRK 360 YGQKLAKGNP CPRAYYRCTM AAGCPVRKQV QRCAEDRTIL ITTYEGNHNH PLPPAAMAMA 420 STTSSAARML LSGSMSSADG LLNSNFLTRS LLPCSSNLAT ISASAPFPTV TLDLTQNPNP 480 LQLPKQPTQF QFPFPNAPQD PANASATALL PQIFGQALYN QSKFSGLQMS QDMEPHRLGQ 540 QSQPASQQNP LADSLAAATA VIAADPNFTA ALAAAITSII GGAHQNIINS TNNAQTTSNS 600 NGNGNITINS TNNAQTTTSN SNGNGNINIS NSNSNGHNKT SNSSFPGN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-22 | 339 | 415 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00209 | DAP | Transfer from AT1G62300 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF147673 | 0.0 | EF147673.1 Populus trichocarpa clone WS0124_D24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011047237.1 | 0.0 | PREDICTED: probable WRKY transcription factor 31 isoform X1 | ||||
Swissprot | Q9C519 | 1e-141 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A2K1XWC2 | 0.0 | A0A2K1XWC2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s15320.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF866 | 34 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-105 | WRKY family protein |