PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG004086.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CO-like
Protein Properties Length: 364aa    MW: 40885.8 Da    PI: 5.8436
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG004086.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.35.7e-07751240
     zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                 ++r C+ +++  + l+C+ ++  lC +C  e H+       Ht++
  CCG004086.1  7 QKRLCDYCNDTTALLYCRADSAKLCFSCDHEVHSTnqlfskHTRS 51
                 7899******99*********************668888888875 PP
2zf-B_box20.41.1e-065291437
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37
                   C+ ++  ++++fC++ ++ +C++C  e H +       H
  CCG004086.1 52 LLCDACHASPVSIFCQTEHSVFCQNCDWERH-SlsslsstH 91
                 57***************************99.435555555 PP
3CCT59.98.9e-21320362143
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                  R+ a++RYkeK+ktR+++K+irYesRK++Ae R R++GrF+k 
  CCG004086.1 320 RDSAISRYKEKKKTRRYSKHIRYESRKVRAEGRTRIRGRFAKM 362
                  899**************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.623653IPR000315B-box-type zinc finger
SMARTSM003366.9E-13653IPR000315B-box-type zinc finger
PfamPF006432.1E-5751IPR000315B-box-type zinc finger
CDDcd000219.33E-6953No hitNo description
PROSITE profilePS501199.7834996IPR000315B-box-type zinc finger
PfamPF006434.2E-55296IPR000315B-box-type zinc finger
CDDcd000211.25E-45382No hitNo description
SMARTSM003360.265496IPR000315B-box-type zinc finger
PfamPF062035.7E-15320362IPR010402CCT domain
PROSITE profilePS5101714.396320362IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MKPRQQQKRL CDYCNDTTAL LYCRADSAKL CFSCDHEVHS TNQLFSKHTR SLLCDACHAS  60
PVSIFCQTEH SVFCQNCDWE RHSLSSLSST HIRRPIEGFT GCPSGNELMT ILGFEELGLK  120
KSLFFSEESD GFMGSELDDG FSDLFLWDSP AVCIDDLIVS SDSGSNFQTL GVPPLPKNRN  180
AACGQHKEEI LCQLRELVRL KPDPYGNADI DPVILQSMDA DPQPPNLNTI GDPGAFTSYK  240
ENLPDWLADY GEAANQVLFP STLPSSNFEE SCAVPDKDFN IIGSASHVHD DHAAEPQHLT  300
IETLPALPNV VTHELNSQER DSAISRYKEK KKTRRYSKHI RYESRKVRAE GRTRIRGRFA  360
KMDH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011013209.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13-like
TrEMBLU7E1V50.0U7E1V5_POPTR; Uncharacterized protein
STRINGPOPTR_0020s00320.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70553145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.17e-93B-box type zinc finger protein with CCT domain