PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG004072.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 503aa    MW: 55450.4 Da    PI: 5.8684
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG004072.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS337.42.6e-1031084961374
         GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselyk.alppsetsekn............sseelaalk 82 
                  lv+lL+++Aea++   ++  la+ +L rl+el+sp++ ++m+Rlaayft AL+  l +s+s  ++  l+++++ +++            +s++laa++
  CCG004072.1 108 LVHLLMAAAEALTGlnKNRDLARVILVRLKELVSPNDgTNMERLAAYFTDALQGLLEGSGSIHSNkHLSATNNGPYHhhhrddpqhhhhQSDVLAAFQ 205
                  68**********98446667************8887669*****************99665433303333333333355667788888899999999* PP

         GRAS  83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpf 176
                  l++++sP++kf+h+taNqaIleav+ ++r+Hi+D+di++G+QW++L+qaL sR++gpp  +lRiT++++  sg  s  +++etg+rL  fA+++g pf
  CCG004072.1 206 LLQDMSPYVKFGHFTANQAILEAVADDRRIHIVDYDIMEGIQWASLMQALVSRKDGPPtpHLRITALSRGGSGrrSIGTVQETGRRLVAFAASIGQPF 303
                  ******************************************************776556*********888898999******************** PP

         GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdslea 273
                  +f+    ++ e++++++L++ +gEal+ n++lql ++  +  ++     ++L+  k+l+P+++ +ve+e+   +++ F+ rf+++l++ysa++dslea
  CCG004072.1 304 SFHQCRLDSDETFRPSALKLVRGEALVMNCMLQLPHFSYRAPDSVA---SFLSGAKTLNPRLIAMVEEEVGPiGDGGFVSRFMDSLHHYSAFYDSLEA 398
                  ****9999*****************************855555555...9*******************9988************************* PP

         GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsv 370
                  ++p + ++r+ vEr++lg++i   +a   ++   r e+ ++W erl ++GF+p+++s  + +qaklll  ++ dgyrvee  s+ lvlgWk+r+L+s+
  CCG004072.1 399 GFPMQGRARALVERVFLGPRIAGSLARIYSA---RGEEGSSWGERLAAVGFQPIKISFANHCQAKLLLGLFN-DGYRVEELaSNRLVLGWKSRRLLSA 492
                  ******************************9...888999********************************.******876999************* PP

         GRAS 371 SaWr 374
                  S W+
  CCG004072.1 493 SIWT 496
                  ***6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.73382476IPR005202Transcription factor GRAS
PfamPF035149.0E-101108496IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MAMAIDGAQF ELDFSSYSSI TTTTTPTTST ENDHGCNWND WSPMVDWEAL SGAQDDFQDL  60
IDSMMDDGAL MNQSNRLTPD TSNSMSTSDT LLVDEETSCS DDLKGLRLVH LLMAAAEALT  120
GLNKNRDLAR VILVRLKELV SPNDGTNMER LAAYFTDALQ GLLEGSGSIH SNKHLSATNN  180
GPYHHHHRDD PQHHHHQSDV LAAFQLLQDM SPYVKFGHFT ANQAILEAVA DDRRIHIVDY  240
DIMEGIQWAS LMQALVSRKD GPPTPHLRIT ALSRGGSGRR SIGTVQETGR RLVAFAASIG  300
QPFSFHQCRL DSDETFRPSA LKLVRGEALV MNCMLQLPHF SYRAPDSVAS FLSGAKTLNP  360
RLIAMVEEEV GPIGDGGFVS RFMDSLHHYS AFYDSLEAGF PMQGRARALV ERVFLGPRIA  420
GSLARIYSAR GEEGSSWGER LAAVGFQPIK ISFANHCQAK LLLGLFNDGY RVEELASNRL  480
VLGWKSRRLL SASIWTSPSD PDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-5311549926382Protein SCARECROW
5b3h_A7e-5311549925381Protein SCARECROW
5b3h_D7e-5311549925381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011013191.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A2K2AI350.0A0A2K2AI35_POPTR; Uncharacterized protein
STRINGPOPTR_0005s15900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62643152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-166GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]