PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CCG003845.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | ARR-B | ||||||||
Protein Properties | Length: 682aa MW: 75349.2 Da PI: 8.7004 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 49.9 | 6.9e-16 | 383 | 436 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k rl W+++L +F++a++ L G +kA P +ile m+v++L++ +v S LQkY+ CCG003845.1 383 KSRLIWNQDLQLKFMSAISAL-GDKKARPEKILEKMNVPCLSRRQVSSRLQKYKA 436 68*******************.9******************************85 PP | |||||||
2 | Response_reg | 29.6 | 3.4e-11 | 26 | 112 | 22 | 107 |
TCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHH CS Response_reg 22 gyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeel 107 ++++++++ +++al +++e + + l++ ++ + +d l +++e+ +++ +p+i+++++ + ++a +a+kaGa+ +l Kp++ +l CCG003845.1 26 FMKICTTTRLASAALSMIREGKdkFKLVMASVNVTNnVDSLGFIRELFKKK--IPVIAISSERSVSTACKAMKAGASLCLDKPTSLYDL 112 567889999*********888888**********999**********7755..9*****************************987665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50110 | 16.181 | 1 | 120 | IPR001789 | Signal transduction response regulator, receiver domain |
Gene3D | G3DSA:3.40.50.2300 | 6.9E-9 | 32 | 127 | No hit | No description |
SuperFamily | SSF52172 | 1.29E-7 | 38 | 122 | IPR011006 | CheY-like superfamily |
SuperFamily | SSF46689 | 2.69E-11 | 381 | 441 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-17 | 381 | 440 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.4E-14 | 383 | 435 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 682 aa Download sequence Send to blast |
MVARTIEKAG SSIFPAVCNN AYSTIFMKIC TTTRLASAAL SMIREGKDKF KLVMASVNVT 60 NNVDSLGFIR ELFKKKIPVI AISSERSVST ACKAMKAGAS LCLDKPTSLY DLKYLWQYVF 120 EKTTICRVKL NIRKVSQGIV VKDEGGETEV PDGIVLDGAA GYQNDTVPSS KGNGQVVGFE 180 DLDATNRQQT MAGLEVEVEE YGASRQQMKA DPKGEGMKIK GEIILNGNIN GQQMIIPNAN 240 NSEDNKDKQV DAQVLHRINN YNQPMTQLKT RGRKNGVEQV AMVKENFTKD AESTAIEMSV 300 LAEIQKHDDS VITRSQQQSG SKRRADGDEW RRIKERRVEA NSEVISSGTK INLEKQKEIE 360 GNKGEGTERF KNYINTDSST EKKSRLIWNQ DLQLKFMSAI SALGDKKARP EKILEKMNVP 420 CLSRRQVSSR LQKYKAQIRR IYDHAIADSS PSNEPSPFNS RTGVLLLKTR PVRGQAGHQG 480 SDYGIEGEKS KILKAPSDGV NQDVFFSRLS GNRNKAPLMS AWTLKGGKQG YGGEHFTIEK 540 VAKSIKLATI STGRNRKMDC ITPPNPASGN VHDAIPTIST DENRNLDPRV SNPNPDNLIN 600 TDEFMKNLNE AIQELDATAV TGPPSCSSNQ SQSLSKFTDM LNLLEEEPVN SKGLTDEPCP 660 DEVARYLDSL SEILLENDSP QP |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024466462.1 | 0.0 | two-component response regulator ORR21 | ||||
TrEMBL | A0A2K1YSQ0 | 1e-169 | A0A2K1YSQ0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s12900.1 | 1e-170 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF39232 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G16110.1 | 2e-16 | response regulator 2 |