PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG003776.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 602aa    MW: 66292.8 Da    PI: 5.9982
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG003776.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS458.44.2e-1402325911374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  lv+lL++cAeav++++l++a+al++++  la +++ +m+++a+yf+eALa+r+++        l p+++++++ s+ l++   f+e++P+lkf+h+ta
  CCG003776.1 232 LVHLLMACAEAVQENNLNMAEALVKQIGFLAVSQAGAMRKVATYFAEALARRIYK--------LCPRNSTDHSLSDILQI--HFYETCPYLKFAHFTA 319
                  68*****************************************************........66777776667777666..4*************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  NqaIlea+eg++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+e+g++La++Ae+++v+fe++ +va++l+dl+ ++L++
  CCG003776.1 320 NQAILEAFEGKKRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAHDDTDQLQEVGWKLAQLAETIHVEFEYRGFVANSLADLDASMLEL 417
                  ************************************************************************************************** PP

         GRAS 197 kp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +p   E++aVn++++ h+ll+ ++++++    vL++vk+++P++v+vveqea+hn++ Fl+rf+e+l+yys+lfdsle ++   s +++++++++l++
  CCG003776.1 418 RPpeFESVAVNSIFEFHKLLAIPGAMRK----VLSVVKQMKPEIVTVVEQEANHNGPVFLDRFTESLHYYSTLFDSLEGSV---STQDKVMSEVYLAK 508
                  **8889**************99999999....************************************************7...9999********** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +i+nvvaceg +r+erhetl +Wr rl++aGF pv+l+++a kqa++ll+ ++ +dgyrvee+sg+l+lgW++rpL+++SaWr
  CCG003776.1 509 QICNVVACEGPSRVERHETLTQWRTRLGSAGFAPVHLGSNAFKQASMLLALFAgGDGYRVEENSGCLMLGWHTRPLIATSAWR 591
                  **********************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011291.3E-3755128No hitNo description
PfamPF120411.7E-3755122IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098566.98206570IPR005202Transcription factor GRAS
PfamPF035141.5E-137232591IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MKREHSNLHP QQPTNPSSLA AGGYSFTSTG TMTSNNGKAK TWEEEKGRQA DGGMDELLAV  60
LGYKVRSSDM AEVAQKLEQL EEVMGHAQED GLSHLASDSV HYNPSDLSTW LESMLSELNP  120
NHHFDLSADS LLAPAESSTV TSIDFTDRKH HQQPKLFEES SSSEYDLKVI PGKAVLSTTQ  180
IDSRESKRLK TDLYQTSSSP SSSSTTLSSL VASTESTRPV VLVDSQENGV RLVHLLMACA  240
EAVQENNLNM AEALVKQIGF LAVSQAGAMR KVATYFAEAL ARRIYKLCPR NSTDHSLSDI  300
LQIHFYETCP YLKFAHFTAN QAILEAFEGK KRVHVIDFSM NQGMQWPALM QALALRPGGP  360
PAFRLTGIGP PAHDDTDQLQ EVGWKLAQLA ETIHVEFEYR GFVANSLADL DASMLELRPP  420
EFESVAVNSI FEFHKLLAIP GAMRKVLSVV KQMKPEIVTV VEQEANHNGP VFLDRFTESL  480
HYYSTLFDSL EGSVSTQDKV MSEVYLAKQI CNVVACEGPS RVERHETLTQ WRTRLGSAGF  540
APVHLGSNAF KQASMLLALF AGGDGYRVEE NSGCLMLGWH TRPLIATSAW RVNNHHPVGG  600
AA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-6922759013377Protein SCARECROW
5b3h_D1e-6922759013377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1024710.0JX102471.1 Populus tomentosa DELLA domain GRAS family transcription factor GAI mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038614.10.0PREDICTED: DELLA protein GAIP
SwissprotQ6EI050.0GAIPB_CUCMA; DELLA protein GAIP-B
TrEMBLB9HW490.0B9HW49_POPTR; Uncharacterized protein
STRINGPOPTR_0010s12080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein