PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG003660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 257aa MW: 29326.7 Da PI: 5.4717 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.6 | 1.2e-19 | 60 | 111 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f++eq++ Le++Fe++ ++ +++ +LA++lgL+ rqV +WFqNrRa++k CCG003660.1 60 RRFSDEQVRSLESMFESETKLEPRKKMQLARELGLQPRQVAIWFQNRRARWK 111 58*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 125 | 3.3e-40 | 59 | 149 | 3 | 93 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 rr+s+eqv++LE++Fe+e+kLep++K++lareLglqprqva+WFqnrRAR+ktkq+E++y++Lk++yd+l+++ e+L++e+e+L +l++ CCG003660.1 59 TRRFSDEQVRSLESMFESETKLEPRKKMQLARELGLQPRQVAIWFQNRRARWKTKQMEQKYKTLKASYDNLASSYESLKNEKESLLVQLQT 149 69***********************************************************************************999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.621 | 53 | 113 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.22E-18 | 55 | 122 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.7E-17 | 56 | 117 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-20 | 60 | 120 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.55E-17 | 60 | 114 | No hit | No description |
Pfam | PF00046 | 5.0E-17 | 60 | 111 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 5.1E-6 | 84 | 93 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 88 | 111 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.1E-6 | 93 | 109 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.7E-13 | 113 | 154 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MSYQILIEGV EDFDQAVARD HAEAAESFAC VDDDDHQQQL EQISRRKKKK KKKGSKMNTR 60 RFSDEQVRSL ESMFESETKL EPRKKMQLAR ELGLQPRQVA IWFQNRRARW KTKQMEQKYK 120 TLKASYDNLA SSYESLKNEK ESLLVQLQTV SNQLGNPCKG LERCDRGIDA VLHDGITNCE 180 VETQQGLDNS SIMAIVCDDM SMGNGHSDDQ GQGFLYTGSP EYSDGTLASV YEKCYSTDSG 240 APFDLSWNNS YCFSFRS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 44 | 50 | RRKKKKK |
2 | 44 | 52 | RRKKKKKKK |
3 | 46 | 52 | KKKKKKK |
4 | 105 | 113 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209184 | 0.0 | AC209184.1 Populus trichocarpa clone POP031-J16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011043718.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
Swissprot | P46897 | 5e-45 | ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | A0A2K1Y7S8 | 1e-175 | A0A2K1Y7S8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s03080.1 | 1e-176 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12005 | 26 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 1e-45 | homeobox 7 |
Publications ? help Back to Top | |||
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