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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
CCG003630.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
GRAS |
Protein Properties |
Length: 421aa MW: 47848.7 Da PI: 7.2459 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
CCG003630.1 | genome | LZU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 392.3 | 5.3e-120 | 24 | 420 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal................. 81
+++lL++cA+ +s++d ++a+++ + ls ++sp+gd+++Rl++ f +AL+ rl + ++++ +++p + n + ++++
CCG003630.1 24 MRQLLVSCADLISQSDYSAAKRFFSILSSNSSPYGDSTERLVHQFIRALSLRLKG--HGISTSIAPAAHV-FNINNMVTSRpcgtndkmlisyesdqe 118
589***************************************************9..4444444443332.222222222234444555555677777 PP
GRAS 82 ....kl..fsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakf 168
++ +++++P+++f+hltaNqaIlea++ + +HiiDfdi++G+QWp+L+qaLa+R+ ++pp+lRiTg g+ + + l++tg+rL kf
CCG003630.1 119 tlrsCYlsLNKITPFIRFCHLTANQAILEAIQVGqQVIHIIDFDIMHGVQWPPLMQALAERSnnslHPPPMLRITGTGH----DLNVLHRTGDRLLKF 212
66652257***********************9652778************************777777***********....9************** PP
GRAS 169 Aeelgvpfefnvl.....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
A++lg++f+f++l ++l+ ++++ + p+EalaVn+v lhr+l+++ +L+ +k l+Pkv +v+e+ea+hn++ Fl+rfleal
CCG003630.1 213 AQSLGLRFHFHPLlllnnDPTSLAHCLPSAITLLPDEALAVNCVSYLHRFLKDDSREL---LLFLHKIKALNPKVGTVAEREANHNHPLFLQRFLEAL 307
************977533223566667999*********************6555444...59*********************************** PP
GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgsl 358
++y+alfdslea+lp++s+er vE+ ++grei+++va eg+ rrerh+++e+W+++l+++GF +vpls +a +qa+lllr + sdgy++ ++s+
CCG003630.1 308 DHYTALFDSLEATLPPNSRERLAVEQIWFGREIMDIVAEEGEGRRERHQKFETWEMMLKSVGFIKVPLSPFARSQAELLLRLNYpSDGYQLRILNNSF 405
***********************************************************************************99************* PP
GRAS 359 vlgWkdrpLvsvSaW 373
+lgW++++L+svS+W
CCG003630.1 406 FLGWQNHSLFSVSSW 420
*************** PP
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Sequence ? help Back to Top |
Protein Sequence Length: 421 aa
Download sequence Send
to blast |
MSSSNSHDRH QEEETPGPPT AFHMRQLLVS CADLISQSDY SAAKRFFSIL SSNSSPYGDS 60 TERLVHQFIR ALSLRLKGHG ISTSIAPAAH VFNINNMVTS RPCGTNDKML ISYESDQETL 120 RSCYLSLNKI TPFIRFCHLT ANQAILEAIQ VGQQVIHIID FDIMHGVQWP PLMQALAERS 180 NNSLHPPPML RITGTGHDLN VLHRTGDRLL KFAQSLGLRF HFHPLLLLNN DPTSLAHCLP 240 SAITLLPDEA LAVNCVSYLH RFLKDDSREL LLFLHKIKAL NPKVGTVAER EANHNHPLFL 300 QRFLEALDHY TALFDSLEAT LPPNSRERLA VEQIWFGREI MDIVAEEGEG RRERHQKFET 360 WEMMLKSVGF IKVPLSPFAR SQAELLLRLN YPSDGYQLRI LNNSFFLGWQ NHSLFSVSSW 420 N
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC209044 | 0.0 | AC209044.1 Populus trichocarpa clone POP057-J01, complete sequence. |