PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG003630.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 421aa    MW: 47848.7 Da    PI: 7.2459
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG003630.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS392.35.3e-120244201373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal................. 81 
                  +++lL++cA+ +s++d ++a+++ + ls ++sp+gd+++Rl++ f +AL+ rl +  ++++ +++p +    n  + ++++                 
  CCG003630.1  24 MRQLLVSCADLISQSDYSAAKRFFSILSSNSSPYGDSTERLVHQFIRALSLRLKG--HGISTSIAPAAHV-FNINNMVTSRpcgtndkmlisyesdqe 118
                  589***************************************************9..4444444443332.222222222234444555555677777 PP

         GRAS  82 ....kl..fsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakf 168
                      ++  +++++P+++f+hltaNqaIlea++   + +HiiDfdi++G+QWp+L+qaLa+R+    ++pp+lRiTg g+    + + l++tg+rL kf
  CCG003630.1 119 tlrsCYlsLNKITPFIRFCHLTANQAILEAIQVGqQVIHIIDFDIMHGVQWPPLMQALAERSnnslHPPPMLRITGTGH----DLNVLHRTGDRLLKF 212
                  66652257***********************9652778************************777777***********....9************** PP

         GRAS 169 Aeelgvpfefnvl.....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                  A++lg++f+f++l       ++l+   ++++ + p+EalaVn+v  lhr+l+++         +L+ +k l+Pkv +v+e+ea+hn++ Fl+rfleal
  CCG003630.1 213 AQSLGLRFHFHPLlllnnDPTSLAHCLPSAITLLPDEALAVNCVSYLHRFLKDDSREL---LLFLHKIKALNPKVGTVAEREANHNHPLFLQRFLEAL 307
                  ************977533223566667999*********************6555444...59*********************************** PP

         GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgsl 358
                  ++y+alfdslea+lp++s+er  vE+ ++grei+++va eg+ rrerh+++e+W+++l+++GF +vpls +a +qa+lllr  + sdgy++   ++s+
  CCG003630.1 308 DHYTALFDSLEATLPPNSRERLAVEQIWFGREIMDIVAEEGEGRRERHQKFETWEMMLKSVGFIKVPLSPFARSQAELLLRLNYpSDGYQLRILNNSF 405
                  ***********************************************************************************99************* PP

         GRAS 359 vlgWkdrpLvsvSaW 373
                  +lgW++++L+svS+W
  CCG003630.1 406 FLGWQNHSLFSVSSW 420
                  *************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.1841400IPR005202Transcription factor GRAS
PfamPF035141.8E-11724420IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MSSSNSHDRH QEEETPGPPT AFHMRQLLVS CADLISQSDY SAAKRFFSIL SSNSSPYGDS  60
TERLVHQFIR ALSLRLKGHG ISTSIAPAAH VFNINNMVTS RPCGTNDKML ISYESDQETL  120
RSCYLSLNKI TPFIRFCHLT ANQAILEAIQ VGQQVIHIID FDIMHGVQWP PLMQALAERS  180
NNSLHPPPML RITGTGHDLN VLHRTGDRLL KFAQSLGLRF HFHPLLLLNN DPTSLAHCLP  240
SAITLLPDEA LAVNCVSYLH RFLKDDSREL LLFLHKIKAL NPKVGTVAER EANHNHPLFL  300
QRFLEALDHY TALFDSLEAT LPPNSRERLA VEQIWFGREI MDIVAEEGEG RRERHQKFET  360
WEMMLKSVGF IKVPLSPFAR SQAELLLRLN YPSDGYQLRI LNNSFFLGWQ NHSLFSVSSW  420
N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-60264206374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2090440.0AC209044.1 Populus trichocarpa clone POP057-J01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043671.10.0PREDICTED: scarecrow-like protein 18
SwissprotQ9ZWC51e-135SCL18_ARATH; Scarecrow-like protein 18
TrEMBLB9I2030.0B9I203_POPTR; Uncharacterized protein
STRINGPOPTR_0012s02710.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129262133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-137GRAS family protein
Publications ? help Back to Top
  1. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]