PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG003566.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 714aa MW: 78560.1 Da PI: 5.4697 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.8 | 2.1e-19 | 47 | 102 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++ +e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k CCG003566.1 47 KKRYHRHTQRQIQDMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 102 688999***********************************************998 PP | |||||||
2 | START | 214.3 | 4.3e-67 | 236 | 455 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS START 1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 e+a +a++el+++a+a+ep+W + e +n++e+l++f+++ + ++ea+r+++vv+m++++lve+l+d + qW++ + +a+tlev+s CCG003566.1 236 EIAVAAMEELMRMAQAGEPLWIQGEnntEVLNEEEYLRTFTRGIGpkplgMRSEASRETAVVIMNHVNLVEILMDAN-QWSTIFCgivsRAMTLEVLS 332 57899********************99999************999********************************.******99999********* PP TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS START 87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177 +g galq+m+ae+q++sp+vp R+ +fvRy++q+++g+w++vdvS+ds ++ + +++++pSg+li++++ng+skv+wveh+++++r++ CCG003566.1 333 TGvagnynGALQVMTAEFQVPSPVVPtRENYFVRYCKQHTDGTWAVVDVSLDSLRPSL----LSKCRRRPSGCLIQELPNGYSKVVWVEHIEVDDRSV 426 *******************************************************965....688899****************************** PP HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 178 hwllrslvksglaegaktwvatlqrqcek 206 ++++r+lv+sgla+gak+wv tl+rqce+ CCG003566.1 427 QNIYRPLVNSGLAFGAKRWVGTLDRQCER 455 ***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-22 | 28 | 102 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.6E-18 | 32 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.439 | 44 | 104 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-17 | 45 | 108 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.8E-17 | 47 | 102 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.37E-17 | 47 | 105 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 79 | 102 | IPR017970 | Homeobox, conserved site |
SuperFamily | SSF55961 | 5.63E-34 | 227 | 457 | No hit | No description |
PROSITE profile | PS50848 | 44.99 | 227 | 458 | IPR002913 | START domain |
CDD | cd08875 | 6.55E-126 | 231 | 454 | No hit | No description |
Pfam | PF01852 | 3.5E-56 | 236 | 455 | IPR002913 | START domain |
SMART | SM00234 | 2.1E-66 | 236 | 455 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.5E-4 | 335 | 454 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 4.4E-25 | 476 | 706 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009913 | Biological Process | epidermal cell differentiation | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 714 aa Download sequence Send to blast |
MFDMAPKSSE NDSSKLKDDD YETKSGTETM EAQSGDEQDP SEQHPKKKRY HRHTQRQIQD 60 MEAFFKECPH PDDKQRKELS RELGLEPLQV KFWFQNKRTQ MKAQHERSEN SILKAENERL 120 RAENNRYKEA LRNASCPNCG GPAALGEMSF DEQHLRIENV RLREEIDRIS GIAAKYVGKP 180 LSSLSNLSPH LPSRSLDLGV SNFGAQSGFV GEMFGATDLL RSVTGPTEAD KSMIVEIAVA 240 AMEELMRMAQ AGEPLWIQGE NNTEVLNEEE YLRTFTRGIG PKPLGMRSEA SRETAVVIMN 300 HVNLVEILMD ANQWSTIFCG IVSRAMTLEV LSTGVAGNYN GALQVMTAEF QVPSPVVPTR 360 ENYFVRYCKQ HTDGTWAVVD VSLDSLRPSL LSKCRRRPSG CLIQELPNGY SKVVWVEHIE 420 VDDRSVQNIY RPLVNSGLAF GAKRWVGTLD RQCERLASSM AINIPTGDLC VITTAEGRKS 480 MLKLAERMVM SFCTGVGAST AHAWTTLSAT GSDDVRVMTR KSMDDPGRPP GIVLSAATSF 540 WIPVQSKRMF DFLRDENHRS EWDILSNGGE VQEMAHIANG RDPGNCVSLL RVNSANSSQS 600 NMLILQESCT DSTGSYVIYA PVDISAMNIV LSGGDPDYVA LLPSGFAILP DGPGYGPAGI 660 LDVASGGSLL TVAFQILVDS VPTAKLSLGS VATVNSLIKC TVERIKAAVM CDNA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU278766 | 1e-90 | GU278766.1 Populus balsamifera isolate POR11 haplotype A L1 specific homeobox gene (ML1) / ovulespecific homeobox protein A20 gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011037708.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like | ||||
Refseq | XP_011037709.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like | ||||
Refseq | XP_011037710.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like | ||||
Refseq | XP_011037711.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like | ||||
Swissprot | Q93V99 | 0.0 | PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
TrEMBL | B9H1F8 | 0.0 | B9H1F8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s01980.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1508 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21750.2 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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