PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG003566.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 714aa    MW: 78560.1 Da    PI: 5.4697
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG003566.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.1e-1947102156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +++ +++t+ q++ +e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  CCG003566.1  47 KKRYHRHTQRQIQDMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 102
                  688999***********************************************998 PP

2START214.34.3e-672364551206
                  HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
        START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                  e+a +a++el+++a+a+ep+W +     e +n++e+l++f+++ +      ++ea+r+++vv+m++++lve+l+d + qW++ +     +a+tlev+s
  CCG003566.1 236 EIAVAAMEELMRMAQAGEPLWIQGEnntEVLNEEEYLRTFTRGIGpkplgMRSEASRETAVVIMNHVNLVEILMDAN-QWSTIFCgivsRAMTLEVLS 332
                  57899********************99999************999********************************.******99999********* PP

                  TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
        START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                  +g      galq+m+ae+q++sp+vp R+ +fvRy++q+++g+w++vdvS+ds ++      + +++++pSg+li++++ng+skv+wveh+++++r++
  CCG003566.1 333 TGvagnynGALQVMTAEFQVPSPVVPtRENYFVRYCKQHTDGTWAVVDVSLDSLRPSL----LSKCRRRPSGCLIQELPNGYSKVVWVEHIEVDDRSV 426
                  *******************************************************965....688899****************************** PP

                  HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 178 hwllrslvksglaegaktwvatlqrqcek 206
                  ++++r+lv+sgla+gak+wv tl+rqce+
  CCG003566.1 427 QNIYRPLVNSGLAFGAKRWVGTLDRQCER 455
                  ***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-2228102IPR009057Homeodomain-like
SuperFamilySSF466894.6E-1832104IPR009057Homeodomain-like
PROSITE profilePS5007116.43944104IPR001356Homeobox domain
SMARTSM003891.2E-1745108IPR001356Homeobox domain
PfamPF000464.8E-1747102IPR001356Homeobox domain
CDDcd000861.37E-1747105No hitNo description
PROSITE patternPS00027079102IPR017970Homeobox, conserved site
SuperFamilySSF559615.63E-34227457No hitNo description
PROSITE profilePS5084844.99227458IPR002913START domain
CDDcd088756.55E-126231454No hitNo description
PfamPF018523.5E-56236455IPR002913START domain
SMARTSM002342.1E-66236455IPR002913START domain
Gene3DG3DSA:3.30.530.202.5E-4335454IPR023393START-like domain
SuperFamilySSF559614.4E-25476706No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MFDMAPKSSE NDSSKLKDDD YETKSGTETM EAQSGDEQDP SEQHPKKKRY HRHTQRQIQD  60
MEAFFKECPH PDDKQRKELS RELGLEPLQV KFWFQNKRTQ MKAQHERSEN SILKAENERL  120
RAENNRYKEA LRNASCPNCG GPAALGEMSF DEQHLRIENV RLREEIDRIS GIAAKYVGKP  180
LSSLSNLSPH LPSRSLDLGV SNFGAQSGFV GEMFGATDLL RSVTGPTEAD KSMIVEIAVA  240
AMEELMRMAQ AGEPLWIQGE NNTEVLNEEE YLRTFTRGIG PKPLGMRSEA SRETAVVIMN  300
HVNLVEILMD ANQWSTIFCG IVSRAMTLEV LSTGVAGNYN GALQVMTAEF QVPSPVVPTR  360
ENYFVRYCKQ HTDGTWAVVD VSLDSLRPSL LSKCRRRPSG CLIQELPNGY SKVVWVEHIE  420
VDDRSVQNIY RPLVNSGLAF GAKRWVGTLD RQCERLASSM AINIPTGDLC VITTAEGRKS  480
MLKLAERMVM SFCTGVGAST AHAWTTLSAT GSDDVRVMTR KSMDDPGRPP GIVLSAATSF  540
WIPVQSKRMF DFLRDENHRS EWDILSNGGE VQEMAHIANG RDPGNCVSLL RVNSANSSQS  600
NMLILQESCT DSTGSYVIYA PVDISAMNIV LSGGDPDYVA LLPSGFAILP DGPGYGPAGI  660
LDVASGGSLL TVAFQILVDS VPTAKLSLGS VATVNSLIKC TVERIKAAVM CDNA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2787661e-90GU278766.1 Populus balsamifera isolate POR11 haplotype A L1 specific homeobox gene (ML1) / ovulespecific homeobox protein A20 gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011037708.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_011037709.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_011037710.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_011037711.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLB9H1F80.0B9H1F8_POPTR; Uncharacterized protein
STRINGPOPTR_0004s01980.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]