PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG003489.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Protein Properties

Length: 88aa MW: 10644.1 Da PI: 9.9765

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG003489.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.7	1.3e-10	7	66	33	90
-SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 33 sktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsef 90 s++ + d+ + W++k+++r+k+++ +l + W ++v+++gLk gD v+F++++++++ CCG003489.1 7 SMEFVAFDRLQKPWKFKVSIRNKGRHskPWLNGEWDDYVHQKGLKKGDKVIFTMVDQENG 66 66777778889*****9977777778***********************8876544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	9.784	1	76	IPR003340	B3 DNA binding domain
CDD	cd10017	6.09E-9	2	62	No hit	No description
Gene3D	G3DSA:2.40.330.10	1.4E-10	4	72	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.34E-9	5	64	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	3.9E-8	6	66	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 88 aa Download sequence Send to blast
MPDGQNSMEF VAFDRLQKPW KFKVSIRNKG RHSKPWLNGE WDDYVHQKGL KKGDKVIFTM 60 VDQENGDRIY YIRAERKLFG FWYSIDQQ

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC149486	1e-133	AC149486.1 Populus trichocarpa clone Pop1-8L22, complete sequence.
GenBank	AC149543	1e-133	AC149543.1 Populus trichocarpa clone Pop1-47M20, complete sequence.
GenBank	AC149575	1e-133	AC149575.1 Populus trichocarpa clone Pop1-41G18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011048022.1	1e-43	PREDICTED: uncharacterized protein LOC105142200
TrEMBL	B9NBH4	5e-56	B9NBH4_POPTR; Uncharacterized protein
STRING	POPTR_0004s01140.1	8e-57	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11016	3	36