PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG003429.2

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Nin-like

Protein Properties

Length: 370aa MW: 42535.3 Da PI: 10.1808

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG003429.2	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	78.3	8.7e-25	248	297	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i led+ k+F lpi +A+++L+v+lTvLKr+CR++GI+RWPhRkiksl CCG003429.2 248 ARIALEDVVKCFGLPIVEASRNLKVGLTVLKRKCRELGIPRWPHRKIKSL 297 6899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.155	232	317	IPR003035	RWP-RK domain
Pfam	PF02042	1.2E-19	250	297	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MASSLIALLV FENNINKELV RSLHVYRLKD GKEMEVEREF VFSVDGPYVE MKANPILRLR 60 RFQVLELFEG QVIGLWRCIF AFHVNNPPHL SHSSFLLSVS RSAFIIVVVE KEASFQLGKG 120 SKHRNDSPLD VTPRTNHLSV ICADSITNMR NPKLKSIPTL AKDIHFILKL SSKTDNEEPS 180 RFSSKEICEV DRDNCHQSKK SLPALDQDLN CLPYSVSPSE LSKSEQIELC AAGVMEKKKK 240 RAASEDIARI ALEDVVKCFG LPIVEASRNL KVGLTVLKRK CRELGIPRWP HRKIKSLDSL 300 IRSLQEEAER HRQDNKDTTM AVAKRRRMLE REKETIEKKP FMEIQNETKR FRQDVFKRRH 360 RARALGNQGL

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MASSLIALLV FENNINKELV RSLHVYRLKD GKEMEVEREF VFSVDGPYVE MKANPILRLR  60
RFQVLELFEG QVIGLWRCIF AFHVNNPPHL SHSSFLLSVS RSAFIIVVVE KEASFQLGKG  120
SKHRNDSPLD VTPRTNHLSV ICADSITNMR NPKLKSIPTL AKDIHFILKL SSKTDNEEPS  180
RFSSKEICEV DRDNCHQSKK SLPALDQDLN CLPYSVSPSE LSKSEQIELC AAGVMEKKKK  240
RAASEDIARI ALEDVVKCFG LPIVEASRNL KVGLTVLKRK CRELGIPRWP HRKIKSLDSL  300
IRSLQEEAER HRQDNKDTTM AVAKRRRMLE REKETIEKKP FMEIQNETKR FRQDVFKRRH  360
RARALGNQGL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011022165.1	0.0	PREDICTED: protein RKD5 isoform X1
TrEMBL	A0A2K2AEL0	0.0	A0A2K2AEL0_POPTR; Uncharacterized protein
STRING	POPTR_0005s10400.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9646	30	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	2e-84	RWP-RK domain-containing protein