PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG003170.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 88aa    MW: 10660.1 Da    PI: 9.7507
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG003170.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.38.6e-117663390
                 -SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
           B3 33 sktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsef 90
                 s++ +  d+  + W++k+++r+k+++   +l + W ++v+++gLk gD v+F++d+++++
  CCG003170.1  7 SMEFVAFDRLQKPWKFKVSIRNKGRHskPWLNGEWDDYVHQKGLKKGDKVIFTMDDQENG 66
                 66777778889*******9977777778*************************9876554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.784176IPR003340B3 DNA binding domain
CDDcd100173.13E-9262No hitNo description
Gene3DG3DSA:2.40.330.109.2E-11471IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-9564IPR015300DNA-binding pseudobarrel domain
PfamPF023623.6E-8666IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MPDGQNSMEF VAFDRLQKPW KFKVSIRNKG RHSKPWLNGE WDDYVHQKGL KKGDKVIFTM  60
DDQENGDRIY YIRAERKLFG FWYSIDQQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1494861e-135AC149486.1 Populus trichocarpa clone Pop1-8L22, complete sequence.
GenBankAC1495431e-135AC149543.1 Populus trichocarpa clone Pop1-47M20, complete sequence.
GenBankAC1495751e-135AC149575.1 Populus trichocarpa clone Pop1-41G18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011048022.17e-44PREDICTED: uncharacterized protein LOC105142200
TrEMBLB9NBH43e-57B9NBH4_POPTR; Uncharacterized protein
STRINGPOPTR_0004s01140.15e-58(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11016336