PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG003168.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 809aa    MW: 88985.9 Da    PI: 6.6211
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG003168.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-181775357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  CCG003168.2 17 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                 5679*****************************************************97 PP
2START169.42.5e-531613682204
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv+++ +++g+++  +++ s++++g  +ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++  g+++l +++
  CCG003168.2 161 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSSGIIAISHGCTGVGARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVLPTAngGTIELLYMQ 257
                  789*******************************************************.8888888888****************9999********* PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  l+a+++l+p Rdf+ +Ry+  l++g++v++++S+ ++q+ p+    +++vRae+lpSg+l++p+++g+s +++v+h+dl+ ++++++lr+l++s+++ 
  CCG003168.2 258 LYAPTTLAPgRDFWLLRYTSVLEDGSLVVCERSLKNTQNGPSmppVQHFVRAEMLPSGYLVRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVL 355
                  ****************************************9988899*************************************************** PP

                  HHHHHHHHTXXXX CS
        START 192 gaktwvatlqrqc 204
                  ++kt++ +l++++
  CCG003168.2 356 AQKTTMVALRQLR 368
                  ******9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.2731276IPR001356Homeobox domain
SMARTSM003891.2E-151480IPR001356Homeobox domain
SuperFamilySSF466891.41E-161680IPR009057Homeodomain-like
CDDcd000861.24E-161777No hitNo description
PfamPF000465.6E-161875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.3E-181975IPR009057Homeodomain-like
CDDcd146861.09E-669108No hitNo description
PROSITE profilePS5084824.897151366IPR002913START domain
CDDcd088752.65E-76155369No hitNo description
Gene3DG3DSA:3.30.530.204.5E-22160367IPR023393START-like domain
SuperFamilySSF559618.93E-36160372No hitNo description
SMARTSM002349.3E-36160370IPR002913START domain
PfamPF018528.0E-51161368IPR002913START domain
PfamPF086706.4E-29695792IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 809 aa     Download sequence    Send to blast
MAMSCKDGKQ PIMDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL VYENGYFRQH  120
THNTPLATKD TSCESVVTSG QHHLKPQHPP RDASPAGLLS IAEETLTEFL SKATGTAVEW  180
VQMPGMKPGP DSSGIIAISH GCTGVGARAC GLVGLEPTRV AEILKDRPSW FRDCRAVDVL  240
NVLPTANGGT IELLYMQLYA PTTLAPGRDF WLLRYTSVLE DGSLVVCERS LKNTQNGPSM  300
PPVQHFVRAE MLPSGYLVRP CEGGGSIIHI VDHMDLEPWS VPEVLRPLYE SSTVLAQKTT  360
MVALRQLRQM AQEASQSNVT NWGRRPAALR ALSQRLSRGF NEALNGFSDE GWSMIGNDGM  420
DDVTILVNSS PDKLMGSNLS FTNGFPAVSS AVLCAKASML LQNVPPAILL RFLREHRSEW  480
ADNNIDAYAA AAVKVGPFSL QGSRVGSFGG QVILPLAHTI EHEEFLEVIK LEGVGHSPED  540
PIMPRDVFLL QLCCGMDENA VGACAELIFA PIDATFADDA PLLPSGFRII PLDSGKEASS  600
PNRTLDLAAA LEVGPAGNRA SSDHSANSGC TRSVMTIAFE FAFESHMQEH VASMTRQYIR  660
SIISSVQRVA LALSPSHLGS QAGLRSPLGT PEAQTLARWI CQSYRSYLGV ELLKSNGEGS  720
ESILKTLWHH SDAIMCCSLK VLPIFTFANQ AGLDMLETTL VALQDITLEK IFDDHGRKTL  780
CSEFPQIMQQ VFPSLLNLSE GKMNPVFPA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF5347160.0KF534716.1 Populus alba x Populus glandulosa HD-ZIPIII mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011013041.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15-like isoform X1
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLV5MYH90.0V5MYH9_9ROSI; HD-ZIPIII
STRINGPOPTR_0003s04860.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.30.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]