PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG003134.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | FAR1 | ||||||||
Protein Properties | Length: 188aa MW: 22128.3 Da PI: 9.7806 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 76.6 | 4.8e-24 | 11 | 100 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y++ +GF+vr++++++s+ n++++ ++fvCskeg+r+++ + +++ + + tr gC a++++ ++ gkw+vtk+++eH+H+l+ CCG003134.1 11 EFYISYGRCTGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVHrKDR--IlpPPPITREGCGAMIRLALK-GGKWVVTKFVKEHTHKLM 100 6******************************************98882233..244899***************.****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.4E-21 | 11 | 100 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MEFNSRDEAR EFYISYGRCT GFTVRIHHNR RSRVNNQVIG QDFVCSKEGF RAKKYVHRKD 60 RILPPPPITR EGCGAMIRLA LKGGKWVVTK FVKEHTHKLM SPSKVPWRGS GKQLISEDEK 120 DKRIRELSLE LYNERQKCKR RCAVYEEQLN MILQDLEKHT EHVSKKVDDV VKSIREIEEQ 180 HSDDTSSE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011012931.1 | 1e-138 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_011012932.1 | 1e-138 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_011026428.1 | 1e-138 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_011026429.1 | 1e-138 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | B9HH49 | 1e-135 | B9HH49_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s01940.1 | 1e-135 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8861 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 5e-36 | FAR1 family protein |