PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG003054.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 858aa MW: 94558.6 Da PI: 6.692 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.6 | 2.1e-18 | 18 | 76 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++ +++ps +r++L +++ +++ +q+kvWFqNrR +ek+ CCG003054.1 18 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76 5679*****************************************************97 PP | |||||||
2 | START | 175.9 | 2.5e-55 | 162 | 370 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g +ra+g+v +++ v+e+l+d++ W ++++++++l+v+ ++ g+++l +++ CCG003054.1 162 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVGARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVLPTAngGTIELLYMQ 258 789*******************************************************.8888888888****************9999********* PP XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS START 98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191 l+a+++l+p Rdf+ +Ry+ l++g++v++++S+ ++q+ p+ +++vRae+lpSg+l++p+++g+s +++v+h+dl+ ++++++lr+l++s+++ CCG003054.1 259 LYAPTTLAPgRDFWLLRYTSVLEDGSLVVCERSLKNTQNGPSmppVQHFVRAEMLPSGYLVRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVL 356 ****************************************9988899*************************************************** PP HHHHHHHHTXXXXX CS START 192 gaktwvatlqrqce 205 ++kt++a+l+++++ CCG003054.1 357 AQKTTMAALRQLRQ 370 **********9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.613 | 13 | 77 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-15 | 15 | 81 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.37E-16 | 17 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.37E-16 | 18 | 78 | No hit | No description |
Pfam | PF00046 | 6.0E-16 | 19 | 76 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-18 | 20 | 76 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.18E-6 | 70 | 109 | No hit | No description |
PROSITE profile | PS50848 | 24.579 | 152 | 367 | IPR002913 | START domain |
CDD | cd08875 | 8.93E-78 | 156 | 372 | No hit | No description |
SMART | SM00234 | 9.9E-39 | 161 | 371 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.94E-37 | 161 | 373 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.8E-22 | 161 | 368 | IPR023393 | START-like domain |
Pfam | PF01852 | 7.7E-53 | 162 | 370 | IPR002913 | START domain |
Pfam | PF08670 | 1.4E-30 | 708 | 806 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 858 aa Download sequence Send to blast |
MAMSCKDGKN PINMDNGKYV RYTPEQVEAL ERLYHDCPKP SSIRRQQLIR ECPILSNIEP 60 KQIKVWFQNR RCREKQRKEA SRLQAVNRKL TAMNKLLMEE NDRLQKQVSQ LVYENGYFRQ 120 HTQNPTLASK DTSCESVVTS GQHHLTPQHP PRDASPAGLL SIAEETLTEF LSKATGTAVE 180 WVQMPGMKPG PDSIGIVAIS HGCTGVGARA CGLVGLEPTR VAEILKDRPS WFRDCRAVDV 240 LNVLPTANGG TIELLYMQLY APTTLAPGRD FWLLRYTSVL EDGSLVVCER SLKNTQNGPS 300 MPPVQHFVRA EMLPSGYLVR PCEGGGSIIH IVDHMDLEPW SVPEVLRPLY ESSTVLAQKT 360 TMAALRQLRQ IAQEASQSSV TNWGRRPAAL RALSQRLSRG FNEALNGFSD EGWSMIGNDG 420 MDDVTILVNS SPDKLMGLNL SFSSGFPAVS SAVLCAKASM LLQAGIQNCF ISLQHMNVPP 480 AILLRFLREH RSEWADNNID AYAAAAVKVG PCSLQGSRIG NFGGQVILPL AHTIEHEEFL 540 EVIKLEGVCH SPEDAIMPRD VFLLQLCCGM DENAVGTCAE LIFAPIDATF ADDAPLLPSG 600 FRIIPLDSGK EASSPNRTLD LASALEVGAG NRASSDFSAN SGCTRSVMTI AFEFAFESHM 660 QEHVASMARQ YIRSIISSVQ RVALALSPSH LGSQAGLRSP LGTPEAQTLA RWICQSYRNY 720 LGVELLKSSS EGIESILKTL WHHSDAIMCC SLKALPVFTF ANQAGLDMLE TTLVALQDIT 780 LEKIFDDHGR KTLCSEFPQI MQQGCTGYLV GSMVWPILYA SPYLYISLAR VLLVYKVVSV 840 CQAWADQFHM KELWPGKC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY919620 | 0.0 | AY919620.1 Populus trichocarpa class III HD-Zip protein 5 (HB5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011046759.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-15 | ||||
Swissprot | Q9ZU11 | 0.0 | ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15 | ||||
TrEMBL | A0A2K2C013 | 0.0 | A0A2K2C013_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s18930.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1946 | 33 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52150.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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