PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG003054.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 858aa    MW: 94558.6 Da    PI: 6.692
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG003054.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.1e-181876357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  CCG003054.1 18 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76
                 5679*****************************************************97 PP

2START175.92.5e-551623702205
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g  +ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++  g+++l +++
  CCG003054.1 162 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVGARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVLPTAngGTIELLYMQ 258
                  789*******************************************************.8888888888****************9999********* PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  l+a+++l+p Rdf+ +Ry+  l++g++v++++S+ ++q+ p+    +++vRae+lpSg+l++p+++g+s +++v+h+dl+ ++++++lr+l++s+++ 
  CCG003054.1 259 LYAPTTLAPgRDFWLLRYTSVLEDGSLVVCERSLKNTQNGPSmppVQHFVRAEMLPSGYLVRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVL 356
                  ****************************************9988899*************************************************** PP

                  HHHHHHHHTXXXXX CS
        START 192 gaktwvatlqrqce 205
                  ++kt++a+l+++++
  CCG003054.1 357 AQKTTMAALRQLRQ 370
                  **********9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.6131377IPR001356Homeobox domain
SMARTSM003891.2E-151581IPR001356Homeobox domain
SuperFamilySSF466891.37E-161781IPR009057Homeodomain-like
CDDcd000861.37E-161878No hitNo description
PfamPF000466.0E-161976IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.6E-182076IPR009057Homeodomain-like
CDDcd146861.18E-670109No hitNo description
PROSITE profilePS5084824.579152367IPR002913START domain
CDDcd088758.93E-78156372No hitNo description
SMARTSM002349.9E-39161371IPR002913START domain
SuperFamilySSF559614.94E-37161373No hitNo description
Gene3DG3DSA:3.30.530.201.8E-22161368IPR023393START-like domain
PfamPF018527.7E-53162370IPR002913START domain
PfamPF086701.4E-30708806IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 858 aa     Download sequence    Send to blast
MAMSCKDGKN PINMDNGKYV RYTPEQVEAL ERLYHDCPKP SSIRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKEA SRLQAVNRKL TAMNKLLMEE NDRLQKQVSQ LVYENGYFRQ  120
HTQNPTLASK DTSCESVVTS GQHHLTPQHP PRDASPAGLL SIAEETLTEF LSKATGTAVE  180
WVQMPGMKPG PDSIGIVAIS HGCTGVGARA CGLVGLEPTR VAEILKDRPS WFRDCRAVDV  240
LNVLPTANGG TIELLYMQLY APTTLAPGRD FWLLRYTSVL EDGSLVVCER SLKNTQNGPS  300
MPPVQHFVRA EMLPSGYLVR PCEGGGSIIH IVDHMDLEPW SVPEVLRPLY ESSTVLAQKT  360
TMAALRQLRQ IAQEASQSSV TNWGRRPAAL RALSQRLSRG FNEALNGFSD EGWSMIGNDG  420
MDDVTILVNS SPDKLMGLNL SFSSGFPAVS SAVLCAKASM LLQAGIQNCF ISLQHMNVPP  480
AILLRFLREH RSEWADNNID AYAAAAVKVG PCSLQGSRIG NFGGQVILPL AHTIEHEEFL  540
EVIKLEGVCH SPEDAIMPRD VFLLQLCCGM DENAVGTCAE LIFAPIDATF ADDAPLLPSG  600
FRIIPLDSGK EASSPNRTLD LASALEVGAG NRASSDFSAN SGCTRSVMTI AFEFAFESHM  660
QEHVASMARQ YIRSIISSVQ RVALALSPSH LGSQAGLRSP LGTPEAQTLA RWICQSYRNY  720
LGVELLKSSS EGIESILKTL WHHSDAIMCC SLKALPVFTF ANQAGLDMLE TTLVALQDIT  780
LEKIFDDHGR KTLCSEFPQI MQQGCTGYLV GSMVWPILYA SPYLYISLAR VLLVYKVVSV  840
CQAWADQFHM KELWPGKC
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9196200.0AY919620.1 Populus trichocarpa class III HD-Zip protein 5 (HB5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011046759.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A2K2C0130.0A0A2K2C013_POPTR; Uncharacterized protein
STRINGPOPTR_0001s18930.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]