PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG003039.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 280aa MW: 31047.2 Da PI: 8.4096 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 99.4 | 2.6e-31 | 66 | 123 | 2 | 60 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 + vrY+eClkNhAa++Gg+a+DGCgEfmp+ geeg+++al+C+AC CHRnFHR+e e e CCG003039.1 66 KMVRYRECLKNHAAAMGGNATDGCGEFMPN-GEEGSIEALTCSACTCHRNFHRKEIEGE 123 679**************************8.999*********************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 6.0E-25 | 68 | 123 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.0E-28 | 68 | 120 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.0E-30 | 69 | 120 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.12 | 70 | 119 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-29 | 203 | 273 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.72E-19 | 208 | 272 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.2E-27 | 211 | 267 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MELSGREGEI PIPLNAFGGG HGHLIQYDHA ATHNPIISST APQIPFNNGP SITTASMDDN 60 HVPYKKMVRY RECLKNHAAA MGGNATDGCG EFMPNGEEGS IEALTCSACT CHRNFHRKEI 120 EGEHTSCGDC YHNNPHFNRV GRKVILGHHK SILAPEALGY PTATGTVVPS RAAAPHHQMI 180 MSYNMGSLPS ESDEQEDGGG VVMARPAQLM KKRYRTKFTQ EQKEKMLNFA EKVGWKLQKQ 240 EETVVQQFCQ EIGIKRRVLK VWMHNNKLNL AKKNPSTTTT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-22 | 212 | 267 | 18 | 73 | ZF-HD homeobox family protein |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216410 | 0.0 | AC216410.1 Populus trichocarpa clone POP030-A06, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011012906.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 4-like | ||||
Swissprot | Q9M9S0 | 1e-74 | ZHD4_ARATH; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A2K2AZE2 | 0.0 | A0A2K2AZE2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s00800.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 6e-77 | homeobox protein 31 |