PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG003039.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ZF-HD
Protein Properties Length: 280aa    MW: 31047.2 Da    PI: 8.4096
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG003039.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.42.6e-3166123260
  ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                  + vrY+eClkNhAa++Gg+a+DGCgEfmp+ geeg+++al+C+AC CHRnFHR+e e e
  CCG003039.1  66 KMVRYRECLKNHAAAMGGNATDGCGEFMPN-GEEGSIEALTCSACTCHRNFHRKEIEGE 123
                  679**************************8.999*********************9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-2568123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.0E-2868120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.0E-3069120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.1270119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.604.6E-29203273IPR009057Homeodomain-like
SuperFamilySSF466894.72E-19208272IPR009057Homeodomain-like
TIGRFAMsTIGR015653.2E-27211267IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MELSGREGEI PIPLNAFGGG HGHLIQYDHA ATHNPIISST APQIPFNNGP SITTASMDDN  60
HVPYKKMVRY RECLKNHAAA MGGNATDGCG EFMPNGEEGS IEALTCSACT CHRNFHRKEI  120
EGEHTSCGDC YHNNPHFNRV GRKVILGHHK SILAPEALGY PTATGTVVPS RAAAPHHQMI  180
MSYNMGSLPS ESDEQEDGGG VVMARPAQLM KKRYRTKFTQ EQKEKMLNFA EKVGWKLQKQ  240
EETVVQQFCQ EIGIKRRVLK VWMHNNKLNL AKKNPSTTTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-222122671873ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164100.0AC216410.1 Populus trichocarpa clone POP030-A06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011012906.10.0PREDICTED: zinc-finger homeodomain protein 4-like
SwissprotQ9M9S01e-74ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A2K2AZE20.0A0A2K2AZE2_POPTR; Uncharacterized protein
STRINGPOPTR_0003s00800.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.26e-77homeobox protein 31