PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG003006.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CO-like
Protein Properties Length: 435aa    MW: 48473.1 Da    PI: 4.5726
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG003006.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.84.5e-081856537
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                  C+ +++k ++l+C+ ++  lC  C +++H++      H
  CCG003006.1 18 PCEFCNSKAAILYCRADSAKLCLLCDQQIHSSntlslkH 56
                 5*****************************775566666 PP
2zf-B_box29.12.1e-0959104341
     zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 
                   ++C++++ ++++++C +++ +lC+dC l +H++       H++ p
  CCG003006.1  59 SQICDNCGAEPASIHCSNDNLFLCQDCDLDSHNSsfsvsslHNRNP 104
                  689*****************************88999999998776 PP
3CCT42.91.7e-154044311643
          CCT  16 kFeKkirYesRKavAesRpRvKGrFvkq 43 
                  +++K+irYesRKa+A++R+RvKGrFvk+
  CCG003006.1 404 RYDKRIRYESRKARADTRKRVKGRFVKA 431
                  69************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.6E-101461IPR000315B-box-type zinc finger
CDDcd000213.24E-61848No hitNo description
PfamPF006439.0E-61958IPR000315B-box-type zinc finger
PROSITE profilePS501199.4421961IPR000315B-box-type zinc finger
PROSITE profilePS5011910.22457105IPR000315B-box-type zinc finger
PfamPF006431.8E-659103IPR000315B-box-type zinc finger
CDDcd000214.85E-56188No hitNo description
SMARTSM003360.276299IPR000315B-box-type zinc finger
PROSITE profilePS5101710.447389431IPR010402CCT domain
PfamPF062031.9E-10404431IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MEKCLNSKQK KDPFLFLPCE FCNSKAAILY CRADSAKLCL LCDQQIHSSN TLSLKHVRSQ  60
ICDNCGAEPA SIHCSNDNLF LCQDCDLDSH NSSFSVSSLH NRNPVEGFMG CPPIVELASL  120
FGFDFKSDIF VDSVPGSCSF EQDGVNFQDF AVSSDNFSVL SSSGKSRQEV YKQLVEMGKR  180
GVVRVNGDGA ELGPDNPPSR CAVQWNSEIL ELENGDEELL HQQTPFTSLL MLPYHVDASE  240
NDCVSDLGFM WDCNYTSQGA QVWDFQLGTS LDCTIPGPQE EGYDVKDPGF MVKNYVDFTE  300
DGALATQKVL DDGHVTSCCS TTCEDNLSRN SCSNQQLSRY KPPTENCNNT PLTGLSPESM  360
PGEPDAHIQL MEEPSLTWFE TLNEVRQKGD AGLFAQNRGN AMLRYDKRIR YESRKARADT  420
RKRVKGRFVK AIENY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164529e-32AC216452.1 Populus trichocarpa clone POP018-D02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011045781.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13-like
TrEMBLA0A3N7ED730.0A0A3N7ED73_POPTR; Uncharacterized protein
STRINGPOPTR_0001s33080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47372843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.12e-59B-box type zinc finger protein with CCT domain