PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002783.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 763aa    MW: 84906.1 Da    PI: 6.2617
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002783.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.22.2e-21103158156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  CCG002783.1 103 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 158
                  7999************************************************9877 PP
2START221.52.7e-692805033206
                  HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
        START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                  a++a++el  +a+ +ep+W +s+    e++n+de+++ f ++++       +s+ea+r++gvv+ ++++lv++++d+  qW+e+++    ka+t++vi
  CCG002783.1 280 ANKAMEELKEMATTGEPLWIRSVetgrEILNYDEYTKVFGSEDSsingrpkRSIEASRETGVVFIDVPRLVQSFMDVD-QWKEMFPclisKAATVDVI 376
                  789************************************88777999*******************************.******************* PP

                  CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
        START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                  s+g      ga+qlm+ae q+l+p+vp R+++fvRy++ql+a++w+ivdvS+d  +++  ++s+v+++++pSg++ie+ksngh+kv+wveh  +++++
  CCG002783.1 377 SNGegasrnGAVQLMFAEVQMLTPMVPtREVYFVRYCKQLNAEQWAIVDVSIDKVEDNI-DASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLQCQKST 473
                  *********************************************************98.9************************************* PP

                  XHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 177 phwllrslvksglaegaktwvatlqrqcek 206
                  +h ++r +v+sgl +ga++w+atlq qce+
  CCG002783.1 474 VHTMYRTVVHSGLTFGARHWMATLQLQCER 503
                  ****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-2389154IPR009057Homeodomain-like
SuperFamilySSF466891.37E-2091159IPR009057Homeodomain-like
PROSITE profilePS5007118.479100160IPR001356Homeobox domain
SMARTSM003894.1E-18102164IPR001356Homeobox domain
PfamPF000461.0E-18103158IPR001356Homeobox domain
CDDcd000865.34E-17110158No hitNo description
PROSITE patternPS000270135158IPR017970Homeobox, conserved site
PROSITE profilePS5084839.183269506IPR002913START domain
SuperFamilySSF559612.06E-33271503No hitNo description
CDDcd088751.89E-109273502No hitNo description
SMARTSM002346.9E-71278503IPR002913START domain
PfamPF018522.0E-55280503IPR002913START domain
Gene3DG3DSA:3.30.530.206.7E-5280314IPR023393START-like domain
Gene3DG3DSA:3.30.530.206.7E-5388498IPR023393START-like domain
SuperFamilySSF559616.32E-13534733No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MGVDMSNPPN SHIKDFFASP ALSLSLAGIF RGANVGNGEA AASMEVEEGE EGSGGGRREE  60
TVEISSENSG PMRSKSDDDF EGEGEHDHED DDDGDDKNKK KKRKKYHRHT AEQIREMEAL  120
FKESPHPDEK QRQQLSKQLG LAPRQVKFWF QNRRTQIKAR TLVLYAIQER HENSLLKSEM  180
DKLREDNKSM RETINKACCP NCGTATTSRD AALTSTEEQQ LRIENAKLKA EVEKLRAVVG  240
KCSPGAPASC SAGNEQENRS SLDFYTGIFG LDKSRIMETA NKAMEELKEM ATTGEPLWIR  300
SVETGREILN YDEYTKVFGS EDSSINGRPK RSIEASRETG VVFIDVPRLV QSFMDVDQWK  360
EMFPCLISKA ATVDVISNGE GASRNGAVQL MFAEVQMLTP MVPTREVYFV RYCKQLNAEQ  420
WAIVDVSIDK VEDNIDASLV KCRKRPSGCI IEDKSNGHCK VIWVEHLQCQ KSTVHTMYRT  480
VVHSGLTFGA RHWMATLQLQ CERLVFFMAT NVPTKDSTGV ATLAGRKSIL KLAQRMTWSF  540
CRAICASSYH TWNKVSSKTG EDIRVSSRKN LNDPGEPIGV ILCAVSSVWL PVVPHILFDF  600
LRDEARRNEW DIMSNGGPVQ TIANLIKGQD RGNAAAILKM KSKENMWVLQ DSCTNAYESM  660
VVYAPVDTNG MQSVITGCDS SNLAILPSGF SILPDGHESR PLVITSRQEE RSTEGGCLLT  720
IAFQILTNTS PTAKPTMESV DSVNTLISCT LKNIKTSLQC EDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198103KKKKRK
298104KKKKRKK
3100104KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011009828.10.0PREDICTED: homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A2K2BZS90.0A0A2K2BZS9_POPTR; Uncharacterized protein
STRINGPOPTR_0001s18470.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47143352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]