PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002729.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 405aa    MW: 45991.7 Da    PI: 8.1093
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002729.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.62.6e-391272743130
          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceaesssssasnsss 87 
                   k+drhski T++g+RdRR+Rls+++a++fFdLqd+L fdk+skt+eWLl qak +ik+l +              s+ss sece  s+ + + + + 
  CCG002729.1 127 SKRDRHSKINTAQGPRDRRMRLSLKVAREFFDLQDKLRFDKASKTVEWLLIQAKNEIKKLSSGsphmnysgsdgtkSASSTSECEMLSEINIETTTK- 223
                  69**********************************************************9998888888888665555556664333333333222. PP

          TCP  88 g........kaaksaakskksqksaasalnlakesrakarararertrekm 130
                  g        + + +++ ++k++++++ ++ +akesr+karararert+ek 
  CCG002729.1 224 GrnvskgrsSPCVKKERTRKASSRKTPFNPFAKESREKARARARERTKEKY 274
                  13555666677888887777777788899********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-42127273IPR005333Transcription factor, TCP
PROSITE profilePS5136932.259128186IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137012.397256273IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MFPLSYNANN AISCSDQQAY NMPLFMSDII SYPKQDVPPP LSLCLPSPFI PCDQREFEDH  60
LIFLQQNYDL FFQEQPLRAQ ATGTNLSEST VFNNMADSNK SDVIELTGIC NKKSNNSTDQ  120
ILRKRSSKRD RHSKINTAQG PRDRRMRLSL KVAREFFDLQ DKLRFDKASK TVEWLLIQAK  180
NEIKKLSSGS PHMNYSGSDG TKSASSTSEC EMLSEINIET TTKGRNVSKG RSSPCVKKER  240
TRKASSRKTP FNPFAKESRE KARARARERT KEKYLCSRRI DKLKFSEESS NNELNQFAGC  300
WDTPLETGDQ ESSIHNFNPS LEVQLAEVDV AICHEREKLG TPEGMIDENL VIMGKYWSHL  360
HNTGTPEEVS SEESIKSQIF NTRHGIRHAP LAVCASMDIH LSDHP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011012754.10.0PREDICTED: uncharacterized protein LOC105116942
RefseqXP_011012755.10.0PREDICTED: uncharacterized protein LOC105116942
TrEMBLA0A2K1Y9K20.0A0A2K1Y9K2_POPTR; Uncharacterized protein
STRINGPOPTR_0012s05660.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.22e-19TCP family protein