PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002692.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 281aa    MW: 31609 Da    PI: 4.614
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002692.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-19122172255
          AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrd      k +r++lg+f taeeAa a+++a+++++g
  CCG002692.1 122 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFKTAEEAALAYDKAALRIRG 172
                  7********.**********3...2234*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.4E-31121181IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-23122182IPR016177DNA-binding domain
PROSITE profilePS5103223.565122180IPR001471AP2/ERF domain
CDDcd000184.87E-30122180No hitNo description
PfamPF008474.7E-14122172IPR001471AP2/ERF domain
SMARTSM003801.9E-36122186IPR001471AP2/ERF domain
PRINTSPR003677.0E-11123134IPR001471AP2/ERF domain
PRINTSPR003677.0E-11146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MAIQSDHRAT SEGILENVWA SYIGEHRGDK VTSHDEQEEF KSSQELPSLD SRDGSKEVLE  60
RLPSLGRWIS MGTESWEGLL DGIIPEINYK ELTSNDREEN KGPSSLSSEE NTVKTEKVTT  120
RHYRGVRRRP WGKYAAEIRD SSRKGARVWL GTFKTAEEAA LAYDKAALRI RGPKTYLNFP  180
LETVAKAMGI DCSENDYSVS STTTSQGYDT SCIILGSGDK VSVVPRRRVS RDWEVNNDLI  240
IMEQPGLQRM ACVEELSVDD FDVVEFQDLG SDYLDSLFSS F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-28121181161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2169170.0AC216917.1 Populus trichocarpa clone POP066-L06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011045878.10.0PREDICTED: ethylene-responsive transcription factor ERF091
TrEMBLU5FZ650.0U5FZ65_POPTR; Uncharacterized protein
STRINGPOPTR_0011s06020.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95473142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.12e-39ERF family protein