PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG002655.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 314aa MW: 35446.8 Da PI: 4.429 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.5 | 2.6e-19 | 86 | 139 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ Fe ++++ e++ +LAk lgL+ rqV +WFqNrRa++k CCG002655.1 86 KKRRLTVDQVQFLERSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 139 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.4 | 3e-41 | 85 | 176 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ +qv++LE+sFe e+kLeperK +la++Lglqprqva+WFqnrRAR+ktkqlEkdy++L+++y++lk+ + L ke+e+L++e++ CCG002655.1 85 EKKRRLTVDQVQFLERSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQSSYNSLKAGYDDLLKEKEKLKAEVN 176 69**************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.13E-20 | 69 | 143 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.329 | 81 | 141 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.8E-19 | 84 | 145 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.2E-16 | 86 | 139 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.99E-18 | 86 | 142 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.5E-20 | 88 | 149 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.3E-5 | 112 | 121 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 116 | 139 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.3E-5 | 121 | 137 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 7.6E-16 | 141 | 182 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001558 | Biological Process | regulation of cell growth | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MAGGTGGSNS NLSVLLQSQR GPCAASQPLE SFFLSGSSPS FLGSRSMMSF EDVHQANGST 60 RPFFRSFDHE DNGDDDLDEY FHQPEKKRRL TVDQVQFLER SFEVENKLEP ERKIQLAKDL 120 GLQPRQVAIW FQNRRARWKT KQLEKDYDVL QSSYNSLKAG YDDLLKEKEK LKAEVNLLTD 180 KLLLKEKEKG SSELSDKDAF SQEPPKRAIA DSASEGEVSK ISTAACKQED ISSAKSDIFD 240 SDSPHYADGV HSSLLEAGDS SYVFEPDQSD LSQDEEDNFS KSLLPPYVFP KLEDDDYSDP 300 SANFEDHAFW SWSY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 141 | RRARWKTKQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00323 | DAP | Transfer from AT3G01470 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF147822 | 0.0 | EF147822.1 Populus trichocarpa clone WS0125_E07 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011028710.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT5-like | ||||
Refseq | XP_011028711.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT5-like | ||||
TrEMBL | A9PHH0 | 0.0 | A9PHH0_POPTR; HD-ZIP family protein | ||||
STRING | POPTR_0015s07640.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1500 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 5e-39 | homeobox 1 |