PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG002630.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 274aa MW: 30226.5 Da PI: 6.3737

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG002630.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.5	7.4e-11	155	202	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i ++++ L++l+P + +k Ka +L + ++YI+sLq CCG002630.1 155 SHSLAERARREKISERMNILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 202 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.09E-8	149	206	No hit	No description
SuperFamily	SSF47459	1.57E-17	149	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.9E-18	151	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.707	151	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.3E-8	155	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.2E-10	157	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MDPPLINETS FSAANPSSYT LNEIWPFPPP PPSSTRLGLR MDNLADPDGS LEESTLTDQS 60 SGNGTRIRKT RDFSSEKDDS SKMVSTTTSA NDLNDSNGKR RKISGSRSEN NDSRAETEAS 120 SAANNKKAEQ SSKPSELPKQ DYIHVRARRG QATDSHSLAE RARREKISER MNILQDLVPG 180 CNKVIGKALV LDEIINYIQS LQCQVEFLSM KLEAVNSRMN TSPMTEHLHP KDLGAQPFVA 240 TGMISGPQPT REYVQGSQSE WLHMQVGGSF ERAT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011028674.1	0.0	PREDICTED: transcription factor bHLH79 isoform X1
Swissprot	Q9LV17	2e-88	BH079_ARATH; Transcription factor bHLH79
TrEMBL	B9IEI7	0.0	B9IEI7_POPTR; Uncharacterized protein
STRING	POPTR_0015s07930.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1171	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	1e-87	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]