PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002481.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 476aa    MW: 52217.9 Da    PI: 7.8924
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002481.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.82.2e-39792412133
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssa....se 72 
                   g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a+ ai el+ +                       +++sa    ++
  CCG002481.1  79 SGGKDRHSKVWTSQGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAAQDAINELPPLnhsfpdtpkqlsdekrtsdgteqGFDSAdvelND 176
                  689******************************************************************99999999999888887744444433422 PP

          TCP  73 ceaesssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmrik 133
                   + ++s+++++n++++ + +++a+s+ s++s+ s l+la+    +sr kar+rarert++++ ++
  CCG002481.1 177 PNFSQSQNQNQNQNQHLSLSKSACSSTSETSKGSGLSLARsgirDSRVKARERARERTAKEKEND 241
                  24445555555555555555555666666666666666655555999*********999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-4480239IPR005333Transcription factor, TCP
PROSITE profilePS5136932.25181139IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.57220238IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MEAEEIQRQH CKFSRVDNGR KDTSRIAQNG YGDHQYPDEE EDGGLKRSNP NNGGGAGGTI  60
DRLREWHHSS RIIRVSRASG GKDRHSKVWT SQGLRDRRVR LSVTTAIQFY DLQDRLGYDQ  120
PSKAVEWLIK AAQDAINELP PLNHSFPDTP KQLSDEKRTS DGTEQGFDSA DVELNDPNFS  180
QSQNQNQNQN QHLSLSKSAC SSTSETSKGS GLSLARSGIR DSRVKARERA RERTAKEKEN  240
DSRIAHHHNI NPISQNSTFT ELLTGGIGSV SNNNNSNSSS SNNNNAASPS EANLFQKGAA  300
ARQWLSTPMD YISTGLLGPS SSRTTHHSSG FPGQIQLGNS IPQPMTMSVP PFNVSGENHQ  360
EQLQHFPFIS DHLIPVAATT QTVGDYNLNF TISSSLAAAF NRGTLQSNSS SPSLLSHLQR  420
FSTSSPIDGS TTNVPFLIGA PQQAMENHQH HQFQHGLQLC YGDGTRHSDQ KGKGKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2386140155Putative transcription factor PCF6
5zkt_B1e-2386140155Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035444.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_011035445.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_011035446.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_011035447.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_011035448.10.0PREDICTED: transcription factor TCP2-like
TrEMBLA0A3S9LXW50.0A0A3S9LXW5_POPTO; Transcription factor TCP2-like
TrEMBLA0A3S9LXX20.0A0A3S9LXX2_POPTO; Transcription factor TCP2-like
STRINGPOPTR_0004s06440.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.24e-42TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2